View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12885_low_2 (Length: 457)

Name: NF12885_low_2
Description: NF12885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12885_low_2
NF12885_low_2
[»] chr3 (18 HSPs)
chr3 (164-442)||(4871157-4871434)
chr3 (164-326)||(4845515-4845675)
chr3 (362-447)||(4834826-4834911)
chr3 (149-238)||(4826196-4826285)
chr3 (354-423)||(4841567-4841636)
chr3 (1-49)||(4860718-4860766)
chr3 (1-49)||(4880725-4880773)
chr3 (395-445)||(4826141-4826191)
chr3 (1-50)||(4845741-4845790)
chr3 (1-50)||(4871500-4871549)
chr3 (391-442)||(4845461-4845512)
chr3 (1-42)||(4835122-4835163)
chr3 (1-40)||(4841810-4841849)
chr3 (379-424)||(4860465-4860510)
chr3 (379-424)||(4880472-4880517)
chr3 (376-423)||(4852184-4852231)
chr3 (376-423)||(4856155-4856202)
chr3 (376-423)||(4877890-4877937)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 164 - 442
Target Start/End: Complemental strand, 4871434 - 4871157
Alignment:
Q  164 caaagattgccctccagccacacatttctgaaacatgaatgcaacaagacatatcaatatttactaagtaattgtaatttacttgtaccaggaagtttag 263  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  4871434 caaagattgccctccagccacacatttctgaaacatcaatgcaacaagacatatcaatatctactaagtaattgtaatttactggtaccaggaagtttag 4871335  T
Q  264 gtggctggttttggttcaattatttaggggggtctattgatgtggtgttgatggcaactggtttgattttgtgttaggggaaagtctgggtgttttttct 363  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| ||    
T  4871334 gtggctggtttttgttcaattatttaagggg-tctattgatgtggtgttgatggaaactggtttgattttgtgttaggggaaggtctgggtgtgtttgct 4871236  T
Q  364 tgatttggttaaggtttttctgttgtgattatattgtattaagggttgtttgggtggttttatgttttggctttttagc 442  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | ||| ||||||||    
T  4871235 tgatttggttaaggtttttctgctgtgattatattgtattaagggttgtttgggtggttttgtgatgtggatttttagc 4871157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 164 - 326
Target Start/End: Complemental strand, 4845675 - 4845515
Alignment:
Q  164 caaagattgccctccagccacacatttctgaaacatgaatgcaacaagacatatcaatatttactaagtaattgtaatttacttgtaccaggaagtttag 263  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  4845675 caaagattaccctccagccacacatttctgaaacatcaatgcaacaagacatatcaatatctactaagtaattgtaatttactggtaccaggaagtttag 4845576  T
Q  264 gtggctggttttggttcaattatttaggggggtctattgatgtggtgttgatggcaactggtt 326  Q
    |||||||||||| |||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  4845575 gtggctggtttttgttcaattattta--ggggtctattgatgtggtgttgatggaaactggtt 4845515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 362 - 447
Target Start/End: Complemental strand, 4834911 - 4834826
Alignment:
Q  362 cttgatttggttaaggtttttctgttgtgattatattgtattaagggttgtttgggtggttttatgttttggctttttagcctttg 447  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||    
T  4834911 cttgatttggttaaggtttttctgctgtgattctattgtattaagggttgtttgggtggttttgtgttgtggctttttggcctttg 4834826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 4826285 - 4826196
Alignment:
Q  149 cgggaaggaccgaagcaaagattgccctccagccacacatttctgaaacatgaatgcaacaagacatatcaatatttactaagtaattgt 238  Q
    ||||||| |||||  |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  4826285 cgggaagtaccgatacaaaaattgccctccacccacacatttctgaaacatcaatgcaacaagacatatcaatatctactaagtaattgt 4826196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 4841636 - 4841567
Alignment:
Q  354 tgttttttcttgatttggttaaggtttttctgttgtgattatattgtattaagggttgtttgggtggttt 423  Q
    ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  4841636 tgtttttgcttgatttggttaaggtttttctgctgtgattctattgtattaagggttgtttaggtggttt 4841567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4860766 - 4860718
Alignment:
Q  1 tattccttgctgctcttatgtttgctcctcaacattttgctgttgatgc 49  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4860766 tattccttgctgctcttatgtttgttcctcaacattttgctgttgatgc 4860718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4880773 - 4880725
Alignment:
Q  1 tattccttgctgctcttatgtttgctcctcaacattttgctgttgatgc 49  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4880773 tattccttgctgctcttatgtttgttcctcaacattttgctgttgatgc 4880725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 445
Target Start/End: Complemental strand, 4826191 - 4826141
Alignment:
Q  395 tattgtattaagggttgtttgggtggttttatgttttggctttttagcctt 445  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  4826191 tattgtattaagggttgttttggtggttttatgttgtggctttttagcctt 4826141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4845790 - 4845741
Alignment:
Q  1 tattccttgctgctcttatgtttgctcctcaacattttgctgttgatgct 50  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  4845790 tattccttgctgcttttatgcttgctcctcaacattttgctgttgatgct 4845741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4871549 - 4871500
Alignment:
Q  1 tattccttgctgctcttatgtttgctcctcaacattttgctgttgatgct 50  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  4871549 tattccttgctgcttttatgcttgctcctcaacattttgctgttgatgct 4871500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 442
Target Start/End: Complemental strand, 4845512 - 4845461
Alignment:
Q  391 attatattgtattaagggttgtttgggtggttttatgttttggctttttagc 442  Q
    |||||||||||||||||||||||||||||||||| || | ||||||||||||    
T  4845512 attatattgtattaagggttgtttgggtggttttgtgatgtggctttttagc 4845461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4835163 - 4835122
Alignment:
Q  1 tattccttgctgctcttatgtttgctcctcaacattttgctg 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  4835163 tattccttgctgctcttatgtttggtcctcaacattttgctg 4835122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4841849 - 4841810
Alignment:
Q  1 tattccttgctgctcttatgtttgctcctcaacattttgc 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  4841849 tattccttgctgctcttatgttttctcctcaacattttgc 4841810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 424
Target Start/End: Complemental strand, 4860510 - 4860465
Alignment:
Q  379 ttttctgttgtgattatattgtattaagggttgtttgggtggtttt 424  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  4860510 ttttctgctgtgattctattgtattaagggttgtttgggcggtttt 4860465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 424
Target Start/End: Complemental strand, 4880517 - 4880472
Alignment:
Q  379 ttttctgttgtgattatattgtattaagggttgtttgggtggtttt 424  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  4880517 ttttctgctgtgattctattgtattaagggttgtttgggcggtttt 4880472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 423
Target Start/End: Complemental strand, 4852231 - 4852184
Alignment:
Q  376 ggtttttctgttgtgattatattgtattaagggttgtttgggtggttt 423  Q
    |||||||||| ||| ||| ||||||||||||| |||||||||||||||    
T  4852231 ggtttttctgatgttattctattgtattaaggattgtttgggtggttt 4852184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 423
Target Start/End: Complemental strand, 4856202 - 4856155
Alignment:
Q  376 ggtttttctgttgtgattatattgtattaagggttgtttgggtggttt 423  Q
    |||||||||| ||| ||| ||||||||||||| |||||||||||||||    
T  4856202 ggtttttctgatgttattctattgtattaaggattgtttgggtggttt 4856155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 423
Target Start/End: Complemental strand, 4877937 - 4877890
Alignment:
Q  376 ggtttttctgttgtgattatattgtattaagggttgtttgggtggttt 423  Q
    |||||||||| ||| ||| ||||||||||||| |||||||||||||||    
T  4877937 ggtttttctgatgttattctattgtattaaggattgtttgggtggttt 4877890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University