View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12886_high_1 (Length: 699)
Name: NF12886_high_1
Description: NF12886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12886_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 291 - 687
Target Start/End: Complemental strand, 28267610 - 28267213
Alignment:
| Q |
291 |
cttacgacgggtgaggaacgcgttggttgttataacagacaaagcgactgaaaacgcatcagtgtgtagctatataaggaaagtgatgaaactgctttta |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267610 |
cttacgacgggtgaggaacgcgttggttgttataacagacaaagcgactgaaaacgcatcagtgtgtagctatataaggaaagtgatgaaactgcttttg |
28267511 |
T |
|
| Q |
391 |
gttggtggagtgaaacccagagtagaaaaccactagtggttttaagagggatgccacgtggaccaataagggattgacatttcggaaaggatattcgtat |
490 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28267510 |
gttggtggagtgaaacccagagaagaaaaccactagtggtttttagagggataccacgtggaccaataagagattgacatttcggaaaggatattcgtat |
28267411 |
T |
|
| Q |
491 |
gttgaagttcgtgtcaatcaccgttgcattgctgacgcgtggtaatgcgattacgcaagccgtagatcgtacattttccnnnnnnnggaaaat-aaaaat |
589 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
28267410 |
gttgaagttcgtgttgatcaccgttgcattgctgacgcgtggtaatgcgtttacgcaagccgtagatcgtacattttcctttttttggaaaataaaaaat |
28267311 |
T |
|
| Q |
590 |
ggcgcttcttttaaattatcgcgaggactgcgccgcgaatatgcgcactcgcgccttgtttattgtcttatatgccccccttttatatttttgccttt |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267310 |
ggcgcttcttttaaattatcgcgaggactgcgccgcgaatatgcgcactcgcgccttgtttattgtcttatatgccccccttttatatttttgccttt |
28267213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 28267868 - 28267674
Alignment:
| Q |
21 |
aatgcaaaaagagtgcaatagaaaatggaggaaaatcggatcaattttccgagaaaatcagtgaagaacaatcaaacttccttagaagnnnnnnnnnnnn |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267868 |
aatgcaaaaagagtgcaatagaaaatggaggaaaatcggatcaattttccgagaaaatcagtgaagaacaatcaaacttccttagaag------aagaaa |
28267775 |
T |
|
| Q |
121 |
nnnntcaaaagggcgaagtttgaaagagtagatccagcgatactatgaatattattgttcaatacacaaaagaaaatgaagtaaaatcggatcaactttc |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
28267774 |
aaaatcaaaagagcgaagtttgaaagagtagatccagcgatactatgaatattgttgttcaatacacaaaacaaaatgaaggaaaatcggatcaactttc |
28267675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 51042487 - 51042528
Alignment:
| Q |
141 |
tgaaagagtagatccagcgatactatgaatattattgttcaa |
182 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
51042487 |
tgaaagagtagatccaacgatactatgaatattgttgttcaa |
51042528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University