View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12886_high_4 (Length: 309)
Name: NF12886_high_4
Description: NF12886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12886_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 5967632 - 5967356
Alignment:
| Q |
20 |
gacacaactatatgtttctatatgcaaaccaattaatacaagaaaagaaatatcactcaccaatccgcttaaagctgaccaaaggtgcaaccacagcaaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5967632 |
gacacaactatatgtttctatatgcaaaccaattaatacaagaaaagaaatatcactcaccaatccgcttaaagctgaccaaaggtgcaaccacaacaaa |
5967533 |
T |
|
| Q |
120 |
tgttgcgaaggtaataacaaatgtacgccctgtccaccaatggacaccaaaccatccttcaaggacaccagcatggtgaattccacttgaagttgttcca |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5967532 |
tgttgcgaaggtaataacaaatgtacgcccggtccaccaatggacaccaaaccatccttcaaggacaccagcatggtgaattccacttgaagttgttcca |
5967433 |
T |
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| Q |
220 |
gaaatcacatcacctacaatatgaataaaaacaaaattgaattatacaaccttaaattcttctctaatgataacagt |
296 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5967432 |
gaaatcacatcacctacaatatgaacaaaaacaaaattgaattatacaaccttaaattcttctctaatgataacagt |
5967356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 71 - 280
Target Start/End: Complemental strand, 5933558 - 5933350
Alignment:
| Q |
71 |
atcactcaccaatccgcttaaagctgaccaaaggtgcaaccacagcaaatgttgcgaaggtaataacaaatgtacgccctgtccaccaatggacaccaaa |
170 |
Q |
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||||||||||||| ||||||||||||||| |||||||| |||||||| ||||| ||||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
5933558 |
atcactcaccaatttgcttaaagctgaccagaggtgcaaacacagcaagtgttgtaaaggtaagaacaaatgtacgcccagtccaccaatggactccaaa |
5933459 |
T |
|
| Q |
171 |
ccatccttcaaggacaccagcatggtgaattccacttgaagttgttccagaaatcacatcacctacaatatgaataaaaacaaaattgaattatacaacc |
270 |
Q |
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| T |
5933458 |
ccatccttcgaggataccagaatggtgaattccacttgaagttgttccagaaaccacatcacctacaatacgaa-caaaacaaaatagaattatacaacc |
5933360 |
T |
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| Q |
271 |
ttaaattctt |
280 |
Q |
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|||| ||||| |
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| T |
5933359 |
ttaagttctt |
5933350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 46 - 238
Target Start/End: Complemental strand, 5983525 - 5983333
Alignment:
| Q |
46 |
aaccaattaatacaagaaaagaaatatcactcaccaatccgcttaaagctgaccaaaggtgcaaccacagcaaatgttgcgaaggtaataacaaatgtac |
145 |
Q |
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||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||||||| |||||| || || ||||||||||| |
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| T |
5983525 |
aaccaattaatacaagaaaagcaaaatcactaaccaatccgcttaaagctgaccaaaggtgcaaacacagcaagtgttgcaaaaacaagaacaaatgtac |
5983426 |
T |
|
| Q |
146 |
gccctgtccaccaatggacaccaaaccatccttcaaggacaccagcatggtgaattccacttgaagttgttccagaaatcacatcacctacaa |
238 |
Q |
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|||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
5983425 |
gcccggtccaccaatggacaccaaaccatccttcaagtataccaggatggtgaattccacttgaagttgttcctgaaatgacatcgcctacaa |
5983333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 5962133 - 5961966
Alignment:
| Q |
73 |
cactcaccaatccgcttaaagctgaccaaaggtgcaaccacagcaaatgttgcgaaggtaataacaaatgtacgccctgtccaccaatggacaccaaacc |
172 |
Q |
| |
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||||||||||| ||||| ||||||||||||||| ||| |||||||| ||||| || || ||||||||| ||||| |||||||||||||||||||||| |
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| T |
5962133 |
cactcaccaattcgctttaagctgaccaaaggtccaaacacagcaagtgttgtaaaaacaacaacaaatgtgcgcccagtccaccaatggacaccaaacc |
5962034 |
T |
|
| Q |
173 |
atccttcaaggacaccagcatggtgaattccacttgaagttgttccagaaatcacatcacctacaata |
240 |
Q |
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|||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
5962033 |
atccttcaaggataccaggatggtgaattccacctgaagtcgttccagaaatcacatcacctacaata |
5961966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 8716464 - 8716498
Alignment:
| Q |
20 |
gacacaactatatgtttctatatgcaaaccaatta |
54 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
8716464 |
gacacaactatatgtttctatatgcaaatcaatta |
8716498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 280
Target Start/End: Complemental strand, 11044173 - 11044030
Alignment:
| Q |
135 |
aacaaatgtacgccctgtccaccaatggacaccaaaccatccttcaaggacaccagcatggtgaattccacttgaagttgttccagaaatcacatcacct |
234 |
Q |
| |
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|||||||||| |||| ||||| ||||| |||||| || | ||||||| || | ||| ||||||||||| | ||| |||||||| || ||||||||||||| |
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| T |
11044173 |
aacaaatgtatgcccagtccaacaatgaacaccagacaacccttcaaagatatcagaatggtgaattctatttgcagttgttctagtaatcacatcacct |
11044074 |
T |
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| Q |
235 |
acaatatgaataaaaacaaaattgaattatacaaccttaaattctt |
280 |
Q |
| |
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| |||| ||||||| ||||||||||||||| ||||| ||||| |
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| T |
11044073 |
ataatacaaataaaa--caaattgaattatacagacttaagttctt |
11044030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 55925070 - 55925157
Alignment:
| Q |
151 |
gtccaccaatggacaccaaaccatccttcaaggacaccagcatggtgaattccacttgaagttgttccagaaatcacatcacctacaatatgaa |
244 |
Q |
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||||||||||| | |||||||||||||||||||| ||| |||||||||||||||| |||||| |||| |||||||||||| |||||||| |
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| T |
55925070 |
gtccaccaatgaataccaaaccatccttcaaggatacc-----ggtgaattccacttgatgttgtt-aagaagtcacatcacctataatatgaa |
55925157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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