View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12886_high_6 (Length: 231)
Name: NF12886_high_6
Description: NF12886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12886_high_6 |
 | |
|
| [»] scaffold0236 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0236 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 12298 - 12078
Alignment:
| Q |
1 |
gacccccaccagaatctgcaaataatcatttccatttggttacaaatcttcattggtataaggaaacaactcttcattggtatagcttgagccaactcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12298 |
gacccccaccagaatctgcaaataatcatttccatttggttacaaatcttcattggtataaggaaacaactcttcattggtatagcttgagccaactcat |
12199 |
T |
|
| Q |
101 |
catattctggccaacattctta-taaacatataagctcatacttatacaagttgcctttgcatgccttttatagtctcgagttagtcgttctcgagtctc |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12198 |
catattctggccaacattcttactaaacatataagctcatacttatacaagttgcctttgcatgccttttatagtctcgagttagtcgttcttgagtctc |
12099 |
T |
|
| Q |
200 |
attctgcatttgcatgccttt |
220 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12098 |
attctgcatttgcatgccttt |
12078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University