View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12886_low_2 (Length: 488)
Name: NF12886_low_2
Description: NF12886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12886_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 14 - 472
Target Start/End: Complemental strand, 31279805 - 31279347
Alignment:
| Q |
14 |
tggacatcaggaagttgagaaagtaacagttcaaagattccaaagaaaacaataaaatgttgtaggctcaattttccatctgcatgataatgcttgtaaa |
113 |
Q |
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| T |
31279805 |
tggatatcaggaagttgagaaagtaacagttcaaagattccaaagaaaacaataaaatgttgcaggctcaattttccatctgcatgataatgcttgtaaa |
31279706 |
T |
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| Q |
114 |
ctgcctgtnnnnnnngtggaaataaaacatttctataaggaagaaaaatggaacatgtataatatttgttctatcatattccataaaatatggtttaatg |
213 |
Q |
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| T |
31279705 |
ctgcctgtaaaaaaagtggaaataaaacatttctataaggaagaaaaatggaacatgtataatatttgttctatcatattccataaaatatggtttaatg |
31279606 |
T |
|
| Q |
214 |
cataaccttaaggctgctaccagcagcaatttggatagcaatgttatttcctagagaagctatttgctggaataaggcaatagaccaatacccccagaat |
313 |
Q |
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| T |
31279605 |
cataaccttaaggctgctaccagcagcaatttggatagcaatgttatttcctagagaagctatttgctggaataaggcaatagaccaatacccccagaat |
31279506 |
T |
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| Q |
314 |
cctttaagaatgattgacaagaaattaaaagaatgttacaatgatcatggaatacgaactgcagcgagcacaaagttgcaaatataacagttgaccattg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31279505 |
cctttaagaatgattgacaagaaattaaaagaatgttacaatgatcatggaatacgaactgcagcaagcacaaagttgcaaatataacagttgaccattg |
31279406 |
T |
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| Q |
414 |
aatgcaatatgcagagaaactacatattatatgtaagttaaaaatttaacataaatcag |
472 |
Q |
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| T |
31279405 |
aatgcaatttgaagagaaactacatattatatgtaagttaaaattttaatataaatcag |
31279347 |
T |
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