View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12886_low_5 (Length: 278)
Name: NF12886_low_5
Description: NF12886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12886_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 32841122 - 32841371
Alignment:
| Q |
19 |
attgtgttggtattgaatgtatttgtctgcgtagttagtatcttattgtatgcatgcaatctatatatgctcctcaattcgtttttatacatgccttgga |
118 |
Q |
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| T |
32841122 |
attgtgttggtattgaatgtatttgtctgcgtagttagtatcttattgtatgcatgcaatctatatatgctcctcaattcatttttatacatgccttgga |
32841221 |
T |
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| Q |
119 |
tttttactatgaccagggtttcaactttcaagatttatatgtattgagtttttggaatatcacaagaatttatttcaattgaattatgtagaaagttttc |
218 |
Q |
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| T |
32841222 |
tttttactatgaccagggtttcaactttcaagatttatatgtattgagtttttggaatatcacaagaatttatttcaattgaattatgtagaaagttttc |
32841321 |
T |
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| Q |
219 |
catttaatttgttgatggatactggtagtatatgtccttaattccctatg |
268 |
Q |
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| T |
32841322 |
catttcatttgttgatggatactggtagtatatgtccttaattccctatg |
32841371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 262
Target Start/End: Original strand, 32834746 - 32834986
Alignment:
| Q |
22 |
gtgttggtattgaatgtatttgtctgcgtagttagtatcttattgtatgcatgcaatctatatatgctcctcaattcgtttttatacatgccttggattt |
121 |
Q |
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| T |
32834746 |
gtgttggtatcgaatgtatttgtctgtgtagttagtatcttatcatatgcatggaatctatgtatgttccttaattcatttttatacatgccttggattt |
32834845 |
T |
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| Q |
122 |
ttactatgaccagggtttcaactttcaagatttatatgtattgagtttttggaatatcacaagaatttatttcaattgaattatgtagaaagttttccat |
221 |
Q |
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| T |
32834846 |
ttactatgaccggggtttcaattttcaagatttatatgtattgagtttttggaatatcactagaatttatttcaattgaattatgtagaaagttttccaa |
32834945 |
T |
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| Q |
222 |
ttaatttgttgatggatactggtagtatatgtccttaattc |
262 |
Q |
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| T |
32834946 |
ttcttttgttgatggatactggtagtatatgtccttaattc |
32834986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 31661710 - 31661627
Alignment:
| Q |
158 |
tgtattgagtttttggaatatcacaagaatttatttcaattgaattatgtagaaagttttccatttaatttgttgatggatact |
241 |
Q |
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| T |
31661710 |
tgtattgagtttttgaaatatcacaagaatttatttcaattgaagggtttagaaagttgtccattttatttgttgatggatact |
31661627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 31683176 - 31683093
Alignment:
| Q |
158 |
tgtattgagtttttggaatatcacaagaatttatttcaattgaattatgtagaaagttttccatttaatttgttgatggatact |
241 |
Q |
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| T |
31683176 |
tgtattgagtttttgaaatatcacaagaatttatttcaattgaagggtttagaaagttgtccattttatttgttgatggatact |
31683093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 31661789 - 31661713
Alignment:
| Q |
55 |
agtatcttattgtatgcatgcaatctatatatgctcctcaattcgtttttatacatgccttggatttttactatgac |
131 |
Q |
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| T |
31661789 |
agtatcttatcatgtgcatgcaatctatatatgttcctcaattcatttttatacatgccttggattttcactatgac |
31661713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 31683255 - 31683179
Alignment:
| Q |
55 |
agtatcttattgtatgcatgcaatctatatatgctcctcaattcgtttttatacatgccttggatttttactatgac |
131 |
Q |
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| T |
31683255 |
agtatcttatcatgtgcatgcaatctatacatgttcctcaattcatttttatacatgccttggattttcactatgac |
31683179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 100 - 272
Target Start/End: Original strand, 7479346 - 7479519
Alignment:
| Q |
100 |
tttttatacatgccttggatttttactatgaccagggtttcaactttcaagatttatatgtattgagtttttggaatatcacaagaatttatttcaattg |
199 |
Q |
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| T |
7479346 |
tttttatatttgccttggatttttactatgac-agagtttcaactttcaagatatatatgtattgagtttttggaatttcacaagaatttatttcaattg |
7479444 |
T |
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| Q |
200 |
aattatgtagaaagttttccatttaatttgttga--tggatactggtagta-tatgtccttaattccctatgcttc |
272 |
Q |
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| T |
7479445 |
aattatgtagaaagtttttcatataatttgttgatgtggat-ctagtagtattatgtccttaattcactatgcttc |
7479519 |
T |
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