View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12887_high_3 (Length: 477)
Name: NF12887_high_3
Description: NF12887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12887_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 35696155 - 35696607
Alignment:
| Q |
18 |
gtttatccccttagagagaaagaaagaatcatttccatttgtccaattcacaaggtggtgggtgagtctcagccataacaccggctgctccccctccatc |
117 |
Q |
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| T |
35696155 |
gtttatccccttagagagaaagaaagaatcatttccatttgtccaattcacaaggtggtgggtgagtctcagccataacaccggctgctccccctccatc |
35696254 |
T |
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| Q |
118 |
aatcaccccatagcattatcatttcaattttcacaacaaaatcaacctcatcacaacaatgtcgatgctagcacctcccttccaactcctagaaatcaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35696255 |
aatcaccccatagcattatcatttcaattttcacaacaaaatcaacctcatcacaacaatgtcgatgctagcacctcccttccaactcctagaaatcaac |
35696354 |
T |
|
| Q |
218 |
gtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagcctatgcagttgcatggctcaatccagaacgtaaacttaccacccaagcagacc |
317 |
Q |
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| T |
35696355 |
gtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagcctatgcagttgcatggctcaatccagaacgtaaacttaccacccaagcagacc |
35696454 |
T |
|
| Q |
318 |
ctcatggtcataacaaccctacctggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatcta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35696455 |
ctcatggtcataacaaccctacctggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatcta |
35696554 |
T |
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| Q |
418 |
tgcctctgcttggctccgtgatgttctcattggaactgtcgctgttcatctca |
470 |
Q |
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| T |
35696555 |
tgcctctgcttggctccgtgatgttctcattggaactgtcgctgttcatctca |
35696607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 341 - 453
Target Start/End: Complemental strand, 47725572 - 47725460
Alignment:
| Q |
341 |
tggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatg |
440 |
Q |
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|||||||| |||||||||||||||||||| |||| || ||| |||||| ||||| || |||||||||||||| |||||||||||||||||| |
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| T |
47725572 |
tggaatgagaaatttgttttccgcgtcgataatgaatttctcaattcagaaagttctgttatcatgattgaaatctacaattctgcttggctccgtgata |
47725473 |
T |
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| Q |
441 |
ttctcattggaac |
453 |
Q |
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| T |
47725472 |
ttctcattggaac |
47725460 |
T |
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