View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12887_high_4 (Length: 419)
Name: NF12887_high_4
Description: NF12887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12887_high_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 47072108 - 47072515
Alignment:
| Q |
11 |
agagaagaacagatgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcattggattcttactttcaataattaatggta |
110 |
Q |
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| T |
47072108 |
agagaagaacagatgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcaatggattcttactttcaataattaatggta |
47072207 |
T |
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| Q |
111 |
ctgggtacatcaattatatacattttggaagaaaggaagatgaactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatag |
210 |
Q |
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| T |
47072208 |
ctgggtacatcaattatatacattttggaagaaaggaagatcaacttgaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatag |
47072307 |
T |
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| Q |
211 |
aaagagcataaactactactatctaactttcataatcaagatgctacatatggcagagattcatgcttcaatttacagttcatttgaatgnnnnnnntgc |
310 |
Q |
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| T |
47072308 |
aaagagcataaactactactatctaactttcataatcaagatgctacatatggcagagattcatgcttcaatttacagttcatttgaatgaaaaaac-gc |
47072406 |
T |
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| Q |
311 |
atttgcgacctaaaatttcgtccgcatccaacacaaataaaatgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttg |
410 |
Q |
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| T |
47072407 |
atttgcgacctaaaatttcgtccgcatccaacacaaataaaatgtaccacttaatatctaaggattgttgatcaagtatctatacagagaagaacggttg |
47072506 |
T |
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| Q |
411 |
gctgtctct |
419 |
Q |
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| T |
47072507 |
gctgtctct |
47072515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 53 - 419
Target Start/End: Original strand, 33598227 - 33598591
Alignment:
| Q |
53 |
actgataccctattatgaatatgaagcattggattcttactttcaataattaatggtactgggtacatcaattatatacattttggaagaaaggaagatg |
152 |
Q |
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| T |
33598227 |
actgataccctattatgaatatgaagcaacgctttcttactttcaataatgaatggtactgggtacatcaattatatacattttggaagaaaggaagatc |
33598326 |
T |
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| Q |
153 |
aactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagat |
252 |
Q |
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| T |
33598327 |
aacttgaaactgaatcaaataacacaatgtaaactaaaagttaattaacatgaaatagaaagggcataaactactactatctaactttcataatcaagat |
33598426 |
T |
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| Q |
253 |
gctacatatggcagagattcatgcttcaatttacagttcatttgaatgnnnnnnntgcatttgcgacctaaaatttcgtccgcatccaacacaaataaaa |
352 |
Q |
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| T |
33598427 |
gctacatatggcagagattcatgcttcaatctacagttcatttgaatgaaaaacgt--atttgagacctaaaatttcgtccgcatccaacacaaataaaa |
33598524 |
T |
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| Q |
353 |
tgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctct |
419 |
Q |
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| T |
33598525 |
tgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctct |
33598591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 159 - 300
Target Start/End: Complemental strand, 18232908 - 18232771
Alignment:
| Q |
159 |
aaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagatgctaca |
258 |
Q |
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| T |
18232908 |
aaactgaatcaagtaacacaatgtaaactagaagctaacaaacatgaaatagaaatagcataaactactactatctaacatttataatcaaga------a |
18232815 |
T |
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| Q |
259 |
tatggcagagattcatgcttcaattt--acagttcatttgaatg |
300 |
Q |
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| T |
18232814 |
tatagcagagattcatgtttctatttacacagttcatttgaatg |
18232771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 18232721 - 18232660
Alignment:
| Q |
349 |
aaaatgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttg |
410 |
Q |
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| T |
18232721 |
aaaatgtaccacttaaaatctaaggattgtggatcaactatctatagagagaaaaaaggttg |
18232660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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