View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12887_high_5 (Length: 360)
Name: NF12887_high_5
Description: NF12887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12887_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 23 - 348
Target Start/End: Complemental strand, 47072817 - 47072492
Alignment:
| Q |
23 |
gtgtaatagtctttcaattcttataactattgtgtcttttgttttattgacaccaatccatgtaccattaagttagcaggtggacaaatataatatttat |
122 |
Q |
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| T |
47072817 |
gtgtaatagtctttcaattcttataactattgtgtcttttgttttattgacaccaatccatgtaccattaagttagcaggtggacaaatataatatttat |
47072718 |
T |
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| Q |
123 |
tactcttatatttttgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtggacaaatctctgttgtgcaagctcttttgga |
222 |
Q |
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| T |
47072717 |
tactcttatatttttgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtggacaaatctctgttgtgcaagctcttttgga |
47072618 |
T |
|
| Q |
223 |
ggaactacctaatcaatttttgactttcatgagaagtagagatatcaaaccacttgtttcccagttctctcatccatccactattctatagatattacaa |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47072617 |
ggaactacctaatcaatttttgactttcatgagaagtagagatatcaaaccacttgtttcccagttccctcatccatccactattctatagatattacaa |
47072518 |
T |
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| Q |
323 |
ttagagacagccaacctttcttctct |
348 |
Q |
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| T |
47072517 |
ttagagacagccaaccgttcttctct |
47072492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 47054599 - 47054492
Alignment:
| Q |
169 |
cattattgtgtttttgacaggtggacaaatctctgttgtgcaagctcttttggaggaactacctaatcaatttttgactttcatgagaagtagagatatc |
268 |
Q |
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| T |
47054599 |
cattcttgtgtttttg-cagaaggacagatctctgttgtgcaagctcttttggaagaattacctgatcagtttttgtctttcatgcgaagtagaaatatc |
47054501 |
T |
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| Q |
269 |
aaaccactt |
277 |
Q |
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||||||||| |
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| T |
47054500 |
aaaccactt |
47054492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 33598601 - 33598568
Alignment:
| Q |
315 |
tattacaattagagacagccaacctttcttctct |
348 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33598601 |
tattacaattagagacagccaacctttcttctct |
33598568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 137 - 327
Target Start/End: Original strand, 18232465 - 18232655
Alignment:
| Q |
137 |
tgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtggacaaatctctgttgtgcaagctcttttggaggaactacctaatc |
236 |
Q |
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| T |
18232465 |
tgctaacaatctttactcatttaattgaaccccattattgtatttttggcaggtggacaaatctctgttgtgcaagctcttttagaggaactacctagtc |
18232564 |
T |
|
| Q |
237 |
aatttttgactttcatgagaagtagagatatcaaaccacttgtttcccagttctctcatccatccactattctatagatattacaattaga |
327 |
Q |
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||||| || ||||||||||||||||||||||||||||||| ||||| || ||| ||||| || | |||||| |||||| ||||||||||| |
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| T |
18232565 |
aatttctggctttcatgagaagtagagatatcaaaccactcgtttcgcatttccctcatgcacgctctattcaatagattttacaattaga |
18232655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 18232306 - 18232372
Alignment:
| Q |
29 |
tagtctttcaattcttataactattgtgtcttttgttttattgacaccaatccatgtaccattaagtt |
96 |
Q |
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|||| ||||||||||||||||| ||| |||||| ||||||||||||| ||| |||||||||| ||||| |
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| T |
18232306 |
tagtttttcaattcttataacttttgagtcttt-gttttattgacacaaattcatgtaccatcaagtt |
18232372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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