View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12887_low_13 (Length: 238)
Name: NF12887_low_13
Description: NF12887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12887_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 14610489 - 14610264
Alignment:
| Q |
4 |
tacacatgaaaggtaagtgtaagtttatgatcaaatgtattcttagatataatacacaagaaaatacctgaagtattccagaatggtcacctttagcatg |
103 |
Q |
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| T |
14610489 |
tacacatgaaatgtaagtgtaagtttatgatcaaatttattcttagatataatacacaagaaaatacctgaagtattccagaatggtcacctttagcatg |
14610390 |
T |
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| Q |
104 |
ttcgctagaagaagaagcccacgtaccaggccaatgggtgccatcagccatccaggtagcctttattaccttgataggcttagaaggatcagccccactc |
203 |
Q |
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| T |
14610389 |
ttcgctagaagaagaagcccacgtaccaggccaatgggtgccatcagccatccaggtagcctttattaccttgataggcttagaaggatcagccccactc |
14610290 |
T |
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| Q |
204 |
tccttgaattgcttcatcttcttcat |
229 |
Q |
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| T |
14610289 |
tccttgaattgcttcatcttcttcat |
14610264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 14598048 - 14598212
Alignment:
| Q |
65 |
aaatacctgaagtattccagaatggtcacctttagcatgttcgctagaagaagaagcccacgtaccaggccaatgggtgccatcagccatccaggtagcc |
164 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||||||||||| || ||| |
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| T |
14598048 |
aaatacctgaagtattccggcatggtcacctttagcatgttcgctagaagaagaaccccaagtgccgggccaatgggtgccatcagccatccaagtggcc |
14598147 |
T |
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| Q |
165 |
tttattaccttgataggcttagaaggatcagccccactctccttgaattgcttcatcttcttcat |
229 |
Q |
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| T |
14598148 |
ttcaatactttaacaggctccaaagggtcagccccagtctccttcaaatgcttcatcatcttcat |
14598212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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