View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12887_low_7 (Length: 336)
Name: NF12887_low_7
Description: NF12887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12887_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 14610665 - 14610970
Alignment:
| Q |
13 |
gagagaagaagccaggttatgatcataacaagaaagccggtgccatgaatgcacttgttcgagcatctgcagtcctatcaaatgggccattcattctcaa |
112 |
Q |
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| T |
14610665 |
gagagaagaggccaggttatgatcataacaagaaagccggtgccatgaatgcacttgttcgagcatctgcagtcctatcaaatgggccattcattctcaa |
14610764 |
T |
|
| Q |
113 |
tcttgattgtgatcactatatctataattgcaaggcagtaaaagaaggaatgtgtttcatgatggacaaaggtggcgaagacatatgctatattcagttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14610765 |
tcttgattgtgatcactatatctataattgcaaggcagtaaaagaaggaatgtgtttcatgatggacaaaggtggcgaagacatatgctatattcagttc |
14610864 |
T |
|
| Q |
213 |
cctcaaagatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaaggtc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14610865 |
cctcaaagatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaaggtc |
14610964 |
T |
|
| Q |
313 |
catttt |
318 |
Q |
| |
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|||||| |
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| T |
14610965 |
catttt |
14610970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 14597840 - 14597535
Alignment:
| Q |
13 |
gagagaagaagccaggttatgatcataacaagaaagccggtgccatgaatgcacttgttcgagcatctgcagtcctatcaaatgggccattcattctcaa |
112 |
Q |
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||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| || | |||||||| |||||||||||||| |
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| T |
14597840 |
gagagaagaggccaggttatgatcacaacaagaaagctggtgccatgaatgcactagttcgagcatctgcaatcttgtcaaatggaccattcattctcaa |
14597741 |
T |
|
| Q |
113 |
tcttgattgtgatcactatatctataattgcaaggcagtaaaagaaggaatgtgtttcatgatggacaaaggtggcgaagacatatgctatattcagttc |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14597740 |
tcttgattgtgatcactatatctataattgtaaggcagtacgtgaaggtatgtgcttcatgctggacaaaggtggcgaagacatatgctatattcagttc |
14597641 |
T |
|
| Q |
213 |
cctcaaagatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaaggtc |
312 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||| ||||||| |
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| T |
14597640 |
ccccaaagatttgaaggtattgatccctcggatcgctatgccaatcacaacactgtattctttgacggaaacatgagagccctcgatggtcttcaaggtc |
14597541 |
T |
|
| Q |
313 |
catttt |
318 |
Q |
| |
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|||||| |
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|
| T |
14597540 |
catttt |
14597535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 44634170 - 44634469
Alignment:
| Q |
15 |
gagaagaagccaggttatgatcataacaagaaagccggtgccatgaatgcacttgttcgagcatctgcagtcctatcaaatgggccattcattctcaatc |
114 |
Q |
| |
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||||||| ||| || |||||||| ||||||||||| || ||||||||||| ||||||||| | ||| ||| | || ||||| |||||| ||||||||| |
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| T |
44634170 |
gagaagaggccgggatatgatcacaacaagaaagctggcgccatgaatgctcttgttcgaactagtgctgtcatgtccaatggaccattcgttctcaatc |
44634269 |
T |
|
| Q |
115 |
ttgattgtgatcactatatctataattgcaaggcagtaaaagaaggaatgtgtttcatgatggacaaaggtggcgaagacatatgctatattcagttccc |
214 |
Q |
| |
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|||| |||||||| || ||||| || | | ||| | | ||||| ||||| || ||| | |||| |||||| || ||||| ||| |||| ||||| |
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| T |
44634270 |
ttgactgtgatcattacatctacaactccttggccttgagggaaggtatgtgctttatgcttgacagaggtggtgacaggatatgttatgttcaattccc |
44634369 |
T |
|
| Q |
215 |
tcaaagatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaaggtcca |
314 |
Q |
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|||||| |||||||||||||| ||| ||||| ||||| || |||||||||||||||||||| | || ||||||||| ||||||||| | ||||||||| |
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| T |
44634370 |
tcaaaggtttgaaggtattgaccccagtgatcgatatgcaaaccacaacaccgtgttctttgatgtgagcatgagagctcttgatggtttacaaggtcca |
44634469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 47919242 - 47919330
Alignment:
| Q |
222 |
tttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaagg |
310 |
Q |
| |
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||||| |||||||||||||| ||| | ||||| ||||||||||| || |||||||| | |||||||||||||||||||| || ||||| |
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| T |
47919242 |
tttgagggtattgatccctctgatagatatgctaatcacaacactgtcttctttgatgttaacatgagagcccttgatggacttcaagg |
47919330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 310
Target Start/End: Complemental strand, 29918000 - 29917900
Alignment:
| Q |
210 |
ttccctcaaagatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttgatggtctccaag |
309 |
Q |
| |
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||||||||||| ||||| |||||||||||||| ||| | ||||| |||||||||||||| |||||||| | |||||||||||||||||||| || |||| |
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| T |
29918000 |
ttccctcaaaggtttgagggtattgatccctctgatagatatgctaatcacaacaccgtcttctttgatgttaacatgagagcccttgatggacttcaag |
29917901 |
T |
|
| Q |
310 |
g |
310 |
Q |
| |
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| |
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| T |
29917900 |
g |
29917900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 41490666 - 41490587
Alignment:
| Q |
198 |
tgctatattcagttccctcaaagatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttga |
277 |
Q |
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|||||| |||| || || |||||||||||||| ||||| || |||||||| ||||||||||||||||| || |||||||| |
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| T |
41490666 |
tgctatgttcaatttccccaaagatttgaaggaattgacccatcagatcggtatgccaatcacaacactgtcttctttga |
41490587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 15418587 - 15418526
Alignment:
| Q |
219 |
agatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgg |
280 |
Q |
| |
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||||||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||||||||| |
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|
| T |
15418587 |
agatttgaagggattgatccctcggatcgatatgcaaatcataacacagtcttctttgacgg |
15418526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 302
Target Start/End: Complemental strand, 12193357 - 12193254
Alignment:
| Q |
199 |
gctatattcagttccctcaaagatttgaaggtattgatccctcagatcgctatgccaatcacaacaccgtgttctttgacgggaacatgagagcccttga |
298 |
Q |
| |
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||||| |||| || |||||||| |||||||| || || || |||||||| ||||||||||| ||||| || |||||||| | || |||||||| || || |
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| T |
12193357 |
gctatgttcaatttcctcaaaggtttgaaggaatcgacccatcagatcggtatgccaatcataacactgtcttctttgatgtcaatatgagagctctcga |
12193258 |
T |
|
| Q |
299 |
tggt |
302 |
Q |
| |
|
|||| |
|
|
| T |
12193257 |
tggt |
12193254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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