View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12887_low_8 (Length: 332)
Name: NF12887_low_8
Description: NF12887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12887_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 36084449 - 36084171
Alignment:
| Q |
6 |
ggagaagcaaaggcaacaccaaaaagatcatatgatcagcaacaacaactacagattgtgcaacatgtgaagaattcaggaatgattaacaacatccaga |
105 |
Q |
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| T |
36084449 |
ggagcagcaatggcaacaccaaaaagatcatatgatcagcaacaacaactacagattgtgcaacatgtgaagaattcaggaatgattaacaacatccaga |
36084350 |
T |
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| Q |
106 |
gtccaagaagagatgaaaaggaagaggaaatgtcaagatcagttctagcaatgtttagagaaaaggaagaagaaattgagagaagaaagttggaggttag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36084349 |
gtccaagaagagatgaaaaggaagaggaaatgtcaagatcagttctagcaatgtttagagaaaaggaagaagaaattgagagaagaaagttggaggttag |
36084250 |
T |
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| Q |
206 |
agataaggttcatgctcatctcggtcgagtcgaaaaggaaacaaagcgattggctgagataagagaagtaagtccaata |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36084249 |
agataaggttcatgctcatctcggtcgagtcgaaaaggaaacaaagcgattggctgagataagagaagtaagtccaata |
36084171 |
T |
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