View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12887_low_9 (Length: 270)
Name: NF12887_low_9
Description: NF12887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12887_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 24 - 270
Target Start/End: Original strand, 18232283 - 18232531
Alignment:
| Q |
24 |
gcttctctagtttgactttttagtagtttttcaattcttataactattgagtctttgttttattgacacaaatccatttaccatcaagtttaaagttgaa |
123 |
Q |
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| T |
18232283 |
gcttctctagtttgacttgttagtagtttttcaattcttataacttttgagtctttgttttattgacacaaattcatgtaccatcaagtttaaagttgaa |
18232382 |
T |
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| Q |
124 |
aatacaaatataacacttatcactcttatatttttggtgtaatagatacctaaaaaa-cactttttatttatattcttaccatgctaacaatctttactc |
222 |
Q |
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| T |
18232383 |
aatacaaataaaacacttattactcttatatttttggggtaatagatacttaaaaaaccacactttatttgtattcttaccatgctaacaatctttactc |
18232482 |
T |
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| Q |
223 |
atttaattgaactctattattgt-gttttggcaggtggacaaatctctg |
270 |
Q |
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| T |
18232483 |
atttaattgaaccccattattgtatttttggcaggtggacaaatctctg |
18232531 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 47072811 - 47072744
Alignment:
| Q |
47 |
tagtttttcaattcttataactattgagtcttt-gttttattgacacaaatccatttaccatcaagtt |
113 |
Q |
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| T |
47072811 |
tagtctttcaattcttataactattgtgtcttttgttttattgacaccaatccatgtaccattaagtt |
47072744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 47072703 - 47072637
Alignment:
| Q |
205 |
tgctaacaatctttactcatttaattgaactctattattgtg-ttttggcaggtggacaaatctctg |
270 |
Q |
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| T |
47072703 |
tgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtggacaaatctctg |
47072637 |
T |
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