View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12888_high_2 (Length: 507)
Name: NF12888_high_2
Description: NF12888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12888_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 39315750 - 39315523
Alignment:
| Q |
18 |
ctttgagcaagaaaattactgctatagccaaagattctggcttttcagttgctcatgcagagaggtatactactgttttaccatggaaagagacatttac |
117 |
Q |
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| T |
39315750 |
ctttgagcaagaaaattactgctatagccaaagattctggcttttcagttgctcatgcagagaggtatactactgttttaccatggaaagagacatttac |
39315651 |
T |
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| Q |
118 |
tttcatgtacaaacacaacaccaaaaatgagacacaagttgttgatgttgtcaattctctcttgggtgaagactttcaacaatccgggtaagaacctcac |
217 |
Q |
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| T |
39315650 |
tttcatgtacaaacacaacaccaaaaatgagacacaagttgttgatgttgtcaattctctcttgggtgaagactttcaacaatccgggtaagaacctcac |
39315551 |
T |
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| Q |
218 |
tccatatatataagttcaaattacacaa |
245 |
Q |
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| T |
39315550 |
tccatatatataagttcaaattacacaa |
39315523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 322 - 493
Target Start/End: Complemental strand, 39315453 - 39315282
Alignment:
| Q |
322 |
gaataggttggtgtatcaaaagtactctgatgcaatgaatgatttaactgaggtgattatggagctattggccattagtttgggtgtggatcgcaaacat |
421 |
Q |
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| T |
39315453 |
gaataggttggtgtatcaaaagtactctgatgcaatgaatgatttaactgaggtgattatggagctattggccattagtttgggtgtggatcgcaaacat |
39315354 |
T |
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| Q |
422 |
tatcaaagattttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttgcagtgctaacctc |
493 |
Q |
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| T |
39315353 |
tatcaaagattttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttgcagtgctaacctc |
39315282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 39328549 - 39328516
Alignment:
| Q |
19 |
tttgagcaagaaaattactgctatagccaaagat |
52 |
Q |
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| T |
39328549 |
tttgagcaagaaaattactgctatagccaaagat |
39328516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 331 - 480
Target Start/End: Complemental strand, 44114186 - 44114037
Alignment:
| Q |
331 |
ggtgtatcaaaagtactctgatgcaatgaatgatttaactgaggtgattatggagctattggccattagtttgggtgtggatcgcaaacattatcaaaga |
430 |
Q |
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| T |
44114186 |
ggtgtatcaaaagtactgtgaagcaatgaaagaattatctttagtgattatggagctcttggccattagtttggggatagatcgtttgcattatcgaaga |
44114087 |
T |
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| Q |
431 |
ttttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttg |
480 |
Q |
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| T |
44114086 |
ttttttgaagatggtgactcaataatgagatgtaactattatccaccttg |
44114037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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