View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12888_high_6 (Length: 301)
Name: NF12888_high_6
Description: NF12888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12888_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 10408367 - 10408289
Alignment:
| Q |
164 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacacccgcaccc |
242 |
Q |
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| T |
10408367 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacaccctcaccc |
10408289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 10408493 - 10408410
Alignment:
| Q |
20 |
attttaatagagaatgaggagtttctatagatatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
103 |
Q |
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| T |
10408493 |
attttaatagagaatgaggagtttctatagatatgccacatagacacaatccaagcattaaaatgatgcaagtttctaattcaa |
10408410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 10391625 - 10391547
Alignment:
| Q |
164 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgatatacacccgcaccc |
242 |
Q |
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| T |
10391625 |
acacatgacatgcaactgttatcagcataactgaattcatcaccttgaaagctcttagggttgatatacacccccaccc |
10391547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 10403134 - 10403070
Alignment:
| Q |
164 |
acacaagacatgcaactgttatcagcataactgaattcatcaccttgaaagcttttagggttgat |
228 |
Q |
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| T |
10403134 |
acacaagacatgcaactgttatcagaatgactgaattcatcaccttgaaagctattagggttgat |
10403070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 51168994 - 51169038
Alignment:
| Q |
59 |
atagacacaatccaagcattagaatgaagaaagtttataattcaa |
103 |
Q |
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| T |
51168994 |
ataggcacaatccaagcattagaatgaagcaagtttctaattcaa |
51169038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 10408273 - 10408236
Alignment:
| Q |
260 |
ctcccatcatcaaggaagtgatctggttcatctcactc |
297 |
Q |
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| T |
10408273 |
ctcctatcatcaaggaagtgatctggttcatcccactc |
10408236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 9580138 - 9580085
Alignment:
| Q |
50 |
atatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
103 |
Q |
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| T |
9580138 |
atatgtcacataggcacaatccaagcattagaatgaagcaagtttcaaattcaa |
9580085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 9585833 - 9585780
Alignment:
| Q |
50 |
atatgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
103 |
Q |
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| T |
9585833 |
atatgtcacataggcacaatccaagcattagaatgaagcaagtttcaaattcaa |
9585780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 9366716 - 9366669
Alignment:
| Q |
56 |
cacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
103 |
Q |
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| T |
9366716 |
cacataggcacaatccaagcattagaatgaaacaagtttctaattcaa |
9366669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 29902789 - 29902739
Alignment:
| Q |
53 |
tgccacatagacacaatccaagcattagaatgaagaaagtttataattcaa |
103 |
Q |
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|||||||||| |||||||||| ||||||||||||| |||||| ||||||| |
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| T |
29902789 |
tgccacataggcacaatccaaacattagaatgaagcaagtttcaaattcaa |
29902739 |
T |
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