View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12888_high_7 (Length: 257)
Name: NF12888_high_7
Description: NF12888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12888_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 17798230 - 17797996
Alignment:
| Q |
1 |
atatagacagaacacccaaaagaaaattcatacaccaaaacagacattcttcaaacattgccaaaggctaaaatatcttaaaacttaggttacaactata |
100 |
Q |
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| T |
17798230 |
atatagacagaacacacaaaagaaaattcatacaccaaaacagacattcttcaaacattgccaaaggctgaaatatcttaaaacttaggttacaactata |
17798131 |
T |
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| Q |
101 |
taatctattaattacaaatgaacttccaaagcaagagcatagagttgatgagaaaataaattgaagtaagaaagaaacaaaatgtatatatggttggcag |
200 |
Q |
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|||| || |||||||| | ||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
17798130 |
taatttactaattacataggaacttccaaagcaaaaacattgagttgatgagaaaataaatggaagtaagaaagaaacaaaatgtgtatatggttggcag |
17798031 |
T |
|
| Q |
201 |
gaagatgataaataaggtagcaggagtgagaagga |
235 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
17798030 |
gaagatgataaataatgtagcaggagtgagaagga |
17797996 |
T |
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