View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12888_low_1 (Length: 989)

Name: NF12888_low_1
Description: NF12888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12888_low_1
NF12888_low_1
[»] chr7 (5 HSPs)
chr7 (318-954)||(24624447-24625069)
chr7 (10-256)||(24625133-24625375)
chr7 (112-179)||(41020506-41020573)
chr7 (112-170)||(27093404-27093462)
chr7 (112-170)||(27184839-27184897)
[»] chr5 (1 HSPs)
chr5 (112-177)||(23012392-23012457)
[»] chr4 (4 HSPs)
chr4 (112-159)||(13134460-13134507)
chr4 (112-159)||(40742601-40742648)
chr4 (112-177)||(4781255-4781320)
chr4 (112-149)||(21539879-21539916)
[»] chr2 (3 HSPs)
chr2 (112-175)||(31808087-31808150)
chr2 (112-169)||(37411236-37411293)
chr2 (112-155)||(30527601-30527644)
[»] chr8 (2 HSPs)
chr8 (112-177)||(33405368-33405433)
chr8 (112-175)||(31580113-31580176)
[»] chr6 (3 HSPs)
chr6 (112-177)||(13364689-13364754)
chr6 (109-159)||(17411870-17411920)
chr6 (112-177)||(9658889-9658954)
[»] chr1 (3 HSPs)
chr1 (112-159)||(35999324-35999371)
chr1 (115-176)||(13997896-13997957)
chr1 (107-176)||(21530694-21530763)
[»] scaffold0697 (1 HSPs)
scaffold0697 (107-176)||(1649-1718)
[»] chr3 (1 HSPs)
chr3 (112-161)||(29508454-29508503)


Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 318 - 954
Target Start/End: Complemental strand, 24625069 - 24624447
Alignment:
Q  318 ttgagagagatatgggtgtgagtgtgtgtggttagtggtgatgtgagagatgacgcagagtataggaggttaaatggggtgagtgagattttggtgaggt 417  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  24625069 ttgagagagatatgggtgtgagtgt-tgtggttagtggtgatgtgagagatgacgcagagtataggggattaaatggggtgagtgagattttggtgaggt 24624971  T
Q  418 gtataagtaagaagtgaagtgaacgaaaggtgctctgttttgtataggcattaaaaagttagattcaatgggaaaggttaagattacactttattgatag 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24624970 gtataagtaagaagtgaagtgaacgaaaggtgctctgttttgtataggaattaaaaagttagattcaatgggaaaggttaagattacactttattgatag 24624871  T
Q  518 aataaaatctgtgtttagattagggttggttaattgttcttgttaagtgaaaaatttagagacaagacgcaaggttaaagagtttgtgaaattacgtgtg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24624870 aataaaatctgtgtttagattagggttggttaattgttcttgttaagtgaaaaatttagagacaagacgcaaggttaaagagtttgtgaaattacgtgtg 24624771  T
Q  618 acctactataagattttggatttaaatacaagttaagattagatccagcagaagctccatctagtatttgttttatggctgtattagattatttttgttt 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||    
T  24624770 acctactataagattttggatttaaatacaagttaagattagatccagcagaagctccatctagtatttgccttatggctatattagattatttttgttt 24624671  T
Q  718 atcatactcaattcctcataaaattatgtttaatcttgttgaggaaaatccggagcagcaatgagaagatgttcaagaacacaagaaagagatataccac 817  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||    
T  24624670 accatactcaattcctcataaaattatgtttaatcttgttgaggaaaatccggagcagcgacgagacaatgttcaagaacacaagaaagagatataccac 24624571  T
Q  818 ttctccacacaaaattcgagtcttgcatatcatattattgaaccactaaaacaataaatggtatacaccttctgactacaccatcaagaatttttaatac 917  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||             ||||||||||||||||||||||    
T  24624570 ttctccacacaaaatatgagtcttgcatatcatattattgaaccactaaaacaatcaatggtata-------------caccatcaagaatttttaatac 24624484  T
Q  918 caggatctaatagtacacatggatcatacttttgctt 954  Q
     ||||||||||||||||||||||||||||||| ||||    
T  24624483 aaggatctaatagtacacatggatcatactttcgctt 24624447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 24625375 - 24625133
Alignment:
Q  10 gttgacaccgttaataatataagaaataaagtaataaagggtaacttcatatgaaacacaaatacggacatcagacacgatacagacacattaatatcgt 109  Q
    ||||| ||||||||||||||||||||| || ||||||||||||  ||||||||||| ||  | ||||||| | ||||     |||| |||||||||||||    
T  24625375 gttgataccgttaataatataagaaatgaaataataaagggtagtttcatatgaaatacggacacggaca-cggacat----cagagacattaatatcgt 24625281  T
Q  110 tgataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtctaat-taaaaaatgtccatgctcgataggtagt 208  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||| |||||||||| | ||||| |||||||||    
T  24625280 tgataatttaagaaaatcataaaatttagtgttattatatatgttgatgttgaacatgacacgtgtctaatctaaaaaatgttcgtgctcaataggtagt 24625181  T
Q  209 gtccaataggaacataggaagtactatgtgtgatagtcatagagagaa 256  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24625180 gtctaataggaacataggaagtactatgtgtgatagtcatagagagaa 24625133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 41020506 - 41020573
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtctaa 179  Q
    ||||||||  ||||||| | |||||||||| |||||||| |||| ||||||||||||||||| |||||    
T  41020506 ataatttacaaaaatcacataatttagtgtaattatatgcgtcggtgttgaacacgacacatatctaa 41020573  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 27093462 - 27093404
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgaca 170  Q
    ||||||||||||||||| | |||||||||| |||||||| |||| ||||  ||||||||    
T  27093462 ataatttaagaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgaca 27093404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 27184839 - 27184897
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgaca 170  Q
    ||||||||||||||||| | |||||||||| |||||||| |||| ||||  ||||||||    
T  27184839 ataatttaagaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgaca 27184897  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 23012457 - 23012392
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtct 177  Q
    ||||||| ||||||||||| |||||| ||| ||||||||||||| ||||| |||||||||||||||    
T  23012457 ataatttgagaaaatcatataatttaatgtaattatatgtgtcggtgttggacacgacacatgtct 23012392  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 13134460 - 13134507
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgt 159  Q
    ||||||||||||||||| | |||||||||| |||||||||||||||||    
T  13134460 ataatttaagaaaatcacataatttagtgtaattatatgtgtcgatgt 13134507  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 40742601 - 40742648
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgt 159  Q
    ||||||| ||||||||||| ||| |||||| |||||||||||||||||    
T  40742601 ataatttgagaaaatcatataatctagtgtaattatatgtgtcgatgt 40742648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 4781255 - 4781320
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtct 177  Q
    ||||||||| ||| ||||| |||||||||| ||||||||| ||||||||  | | |||||||||||    
T  4781255 ataatttaaaaaactcatataatttagtgtgattatatgtatcgatgttagatatgacacatgtct 4781320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 21539916 - 21539879
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatat 149  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  21539916 ataatttaagaaaatcatataatttagtgtaattatat 21539879  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 31808087 - 31808150
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgt 175  Q
    ||||||||| ||||||| | |||| ||||| ||||||||||||  |||||||||||||||||||    
T  31808087 ataatttaacaaaatcacataattcagtgtaattatatgtgtcagtgttgaacacgacacatgt 31808150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 37411293 - 37411236
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgac 169  Q
    ||||||| ||||||||| | |||| ||||| ||||||||||||||||| |||||||||    
T  37411293 ataatttgagaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacacgac 37411236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 30527644 - 30527601
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcg 155  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||    
T  30527644 ataatttgagaaaatcatataatttagtgtaattatatgtgtcg 30527601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 33405433 - 33405368
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtct 177  Q
    ||||||| |||||| || | |||||||||| ||||||||||||| ||| | |||||||||||||||    
T  33405433 ataatttgagaaaaacacataatttagtgtaattatatgtgtcggtgtcggacacgacacatgtct 33405368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 31580176 - 31580113
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgt 175  Q
    ||||||||||||||||| | |||| ||||| |||||| |||||||||| | || ||||||||||    
T  31580176 ataatttaagaaaatcacataattgagtgtaattataggtgtcgatgtcggacgcgacacatgt 31580113  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 13364754 - 13364689
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtct 177  Q
    ||||||| ||||||||||| |||| ||||| || |||||||||| ||||| |||||| ||||||||    
T  13364754 ataatttgagaaaatcatataattcagtgtaatcatatgtgtcggtgttggacacgatacatgtct 13364689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 17411920 - 17411870
Alignment:
Q  109 ttgataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgt 159  Q
    |||||||||||||||||||||| |||| ||| | ||||||||||| |||||    
T  17411920 ttgataatttaagaaaatcatataattcagtataattatatgtgtggatgt 17411870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 9658889 - 9658954
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtct 177  Q
    ||||||||||||||||| | |||| ||||| ||||||| ||||| ||||  ||||||||| |||||    
T  9658889 ataatttaagaaaatcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtct 9658954  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 35999371 - 35999324
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgt 159  Q
    ||||||||||||||||||| |||||||| | ||||||||||| |||||    
T  35999371 ataatttaagaaaatcatataatttagtataattatatgtgttgatgt 35999324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 13997896 - 13997957
Alignment:
Q  115 atttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtc 176  Q
    |||||| ||||||| | |||| ||||| ||||||||||||| ||||| | ||||||||||||    
T  13997896 atttaaaaaaatcacataattcagtgtaattatatgtgtcggtgttggagacgacacatgtc 13997957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 21530694 - 21530763
Alignment:
Q  107 cgttgataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtc 176  Q
    |||| ||||||| ||||||||||| ||||| || | |||||| |||||| ||| | ||||||||||||||    
T  21530694 cgttaataatttgagaaaatcatataatttggtataattataagtgtcggtgtcggacacgacacatgtc 21530763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 1649 - 1718
Alignment:
Q  107 cgttgataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttgaacacgacacatgtc 176  Q
    |||| ||||||| ||||||||||| ||||| || | |||||| |||||| ||| | ||||||||||||||    
T  1649 cgttaataatttgagaaaatcatataatttggtataattataagtgtcggtgtcggacacgacacatgtc 1718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 29508454 - 29508503
Alignment:
Q  112 ataatttaagaaaatcataaaatttagtgttattatatgtgtcgatgttg 161  Q
    ||||||| | ||||||||| |||| ||||| |||||||||||||||||||    
T  29508454 ataatttgaaaaaatcatataattcagtgtaattatatgtgtcgatgttg 29508503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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