View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12888_low_10 (Length: 250)
Name: NF12888_low_10
Description: NF12888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12888_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 8974817 - 8974583
Alignment:
| Q |
1 |
ttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttccctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8974817 |
ttgtacaccaacatcataaacaagtccagggttaagtgctttgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttacctttt |
8974718 |
T |
|
| Q |
101 |
ccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctt |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974717 |
ccaatgtcttttatgagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctt |
8974618 |
T |
|
| Q |
201 |
tcaaaagtgctcctacaccagcaacatgaggagat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
8974617 |
tcaaaagtgctcctacaccagcaacatgaggagat |
8974583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8963421 - 8963190
Alignment:
| Q |
1 |
ttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttccctttt |
100 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||||||| | || |||||||||||||||||||| |||||||||||||||| | |||| ||||| |
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| T |
8963421 |
ttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttgatatgaccagctcccaatgcaaaaggtgttgctgctatgttatctttt |
8963322 |
T |
|
| Q |
101 |
ccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctt |
200 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||| |
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|
| T |
8963321 |
ccaatgtctttgataagttccttagtgttatcaaatatgtctgatgttgtcatcattgccgacctaatagctgtcgggctccaatcagcatgtgctcctt |
8963222 |
T |
|
| Q |
201 |
tcaaaagtgctcctacaccagcaacatgagga |
232 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |
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|
| T |
8963221 |
tcaaaagtgctcctacaccggcaacatgagga |
8963190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 8945663 - 8945894
Alignment:
| Q |
1 |
ttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttccctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| ||||| | | || ||||||||| ||||| ||| ||||| || | || |||||| |
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|
| T |
8945663 |
ttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggatcaacataaccagctcccaatgcaagaggagttgcaacttcattacctttt |
8945762 |
T |
|
| Q |
101 |
ccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctt |
200 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||| |||||||||||| ||||| ||||| |||||||||||||||||||||||| | || ||| |
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|
| T |
8945763 |
tcaatgtctttgatatgttccttagtattatcatatatgtttgatgttgtcataattgccgaccttatagctgcagggctccaatcaacacgcgctcctt |
8945862 |
T |
|
| Q |
201 |
tcaaaagtgctcctacaccagcaacatgagga |
232 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| |
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|
| T |
8945863 |
ttaaaagtgctcctacaccggcaacatgagga |
8945894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8958407 - 8958176
Alignment:
| Q |
1 |
ttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttccctttt |
100 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||||||| || || || | |||||||||||| ||||||||| |||||| | || || | ||| |
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|
| T |
8958407 |
ttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaaggagttgctgctttattatcattt |
8958308 |
T |
|
| Q |
101 |
ccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctt |
200 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| |||||| || |||||||| ||||| |||| ||| || ||||||||||||||| | ||||| ||| |
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|
| T |
8958307 |
ccaatgtctttaatatgttccttagtattatcaattatgtccgacgttgtcataattgccgaccgaatcgcggcagggctccaatcaccgtgtgctcctt |
8958208 |
T |
|
| Q |
201 |
tcaaaagtgctcctacaccagcaacatgagga |
232 |
Q |
| |
|
|||||||||| | ||||| |||||||||||| |
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|
| T |
8958207 |
tcaaaagtgccgcgacacctgcaacatgagga |
8958176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 61 - 231
Target Start/End: Original strand, 9948194 - 9948363
Alignment:
| Q |
61 |
agctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgct |
160 |
Q |
| |
|
||||||| ||||| ||| ||||| || ||||| |||| ||| |||||||| ||| ||||||||| ||||||||||||| |||||||||||| |||||| |
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|
| T |
9948194 |
agctcctaatgcaagaggagttgcaactttgttaccttctccgatgtctttgatatgttccttagcattatcaaatatggttgatgttgtcataattgct |
9948293 |
T |
|
| Q |
161 |
gacctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgagg |
231 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
9948294 |
gaccttatagctgcaggg-tccaatcagcatgtgctcctttcaaaagtgctccaacaccagcaacatgagg |
9948363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 34962446 - 34962629
Alignment:
| Q |
1 |
ttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttccctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| || || || | |||||||||||| |||||||||||||||| | |||| || || |
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|
| T |
34962446 |
ttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaacatgaccagctcccaatgcaaaaggtgttgctgctttgt---ctgtt |
34962542 |
T |
|
| Q |
101 |
ccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatca |
187 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||| |||| ||| ||||| |||||||||||| |
|
|
| T |
34962543 |
ccaatgtctttgatttgttccttagaattatcaaatatgtctgatgttgtcattattgccgaccgaattgctgctgggctccaatca |
34962629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 21686826 - 21687053
Alignment:
| Q |
1 |
ttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttccctttt |
100 |
Q |
| |
|
||||||||| | |||||||||||| ||||| | ||||||||| || ||||| |||||||||||||| ||||||||| |||||| | |||| || ||| |
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|
| T |
21686826 |
ttgtacaccgatatcataaacaagaccaggatcaagtgctctattagggttaatatgaccagctcccaatgcaaaaggagttgctgctctgttaccattt |
21686925 |
T |
|
| Q |
101 |
ccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctt |
200 |
Q |
| |
|
||||||||||| ||| ||||||||||||| || |||||||||||||||||||| ||||| |||||||||| || ||||||||| || ||||| ||| |
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|
| T |
21686926 |
ccaatgtctttgatatgttccttagtattgtctaatatgtctgatgttgtcataattgccgacctaatagatgacgggctccaaccattgtgtgcccctt |
21687025 |
T |
|
| Q |
201 |
tcaaaagtgctcctacaccagcaacatg |
228 |
Q |
| |
|
| ||||| ||| ||||||| |||||||| |
|
|
| T |
21687026 |
ttaaaagcgctgctacacctgcaacatg |
21687053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 19375625 - 19375744
Alignment:
| Q |
89 |
ttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaa |
188 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| ||||||| || | |||||||||||||||||| || || || | ||| |||| || |||||||||| |
|
|
| T |
19375625 |
ttgttaccttttccaatgtctttcataagttttgtagtattgtctattatgtctgatgttgtcataatcgcagaacgaattgctgtcggactccaatcaa |
19375724 |
T |
|
| Q |
189 |
catgtgcagctttcaaaagt |
208 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
19375725 |
catgtgctcctttcaaaagt |
19375744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 49008555 - 49008383
Alignment:
| Q |
12 |
catcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttt |
111 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||| |||||||| || ||||| || ||||||| ||| ||| || || ||||||||| | |
|
|
| T |
49008555 |
catcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgt |
49008456 |
T |
|
| Q |
112 |
tataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaa |
184 |
Q |
| |
|
|| ||||| || || || || || |||||||||||||||||||| || || ||||| ||||| ||||||||| |
|
|
| T |
49008455 |
gatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctgggctccaa |
49008383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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