View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12888_low_11 (Length: 242)
Name: NF12888_low_11
Description: NF12888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12888_low_11 |
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| [»] scaffold0003 (2 HSPs) |
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| [»] scaffold0077 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 14789461 - 14789293
Alignment:
| Q |
52 |
tagacagcaagaattgtctgaaagacgatcaaattacagtcagacgaaggacaaagataaacaagtggaaataacgagtgtcatagacagagagcacatg |
151 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14789461 |
tagatagcaggaattgtctgaaagacgatcaaattacagtcagacgaaggataaagataaacaagtggaaataacgagtgtcatagactgagagcacatg |
14789362 |
T |
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| Q |
152 |
atgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatgatgaggct |
220 |
Q |
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| T |
14789361 |
atgccattttaggatttgacaaatttctattttgtattgtcacatgttcaaggaacacatgatgaggct |
14789293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 52 - 220
Target Start/End: Original strand, 2705622 - 2705790
Alignment:
| Q |
52 |
tagacagcaagaattgtctgaaagacgatcaaattacagtcagacgaaggacaaagataaacaagtggaaataacgagtgtcatagacagagagcacatg |
151 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
2705622 |
tagacagcaagaattgtctgaaagacgatcgaattacagtcatacgaaggacaaagataaacaagtggaaataacgaatgtcatagacggagagcacatg |
2705721 |
T |
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| Q |
152 |
atgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatgatgaggct |
220 |
Q |
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| T |
2705722 |
atgccatttcaggatttgacaaatatctattttgcattgtcacatgttcaaggaacacatggtgaggct |
2705790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 22311595 - 22311520
Alignment:
| Q |
138 |
acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga |
213 |
Q |
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| T |
22311595 |
acagagatcacatgatgccatttaatgatttgacaaatttaaattttacatcgtcacatgttcaaggaacacatga |
22311520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 24276015 - 24275945
Alignment:
| Q |
142 |
agagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatg |
212 |
Q |
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| T |
24276015 |
agagcccatgatgccatttcaagatttgacaaatttaaattgtgtgttgtcacatgttcaaggaacacatg |
24275945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 24386198 - 24386268
Alignment:
| Q |
142 |
agagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatg |
212 |
Q |
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| T |
24386198 |
agagcccatgatgccatttcaagatttgacaaatttaaattgtgtgttgtcacatgttcaaggaacacatg |
24386268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 36098646 - 36098571
Alignment:
| Q |
138 |
acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga |
213 |
Q |
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| T |
36098646 |
acagagatcacatgatgctatttaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga |
36098571 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 208186 - 208111
Alignment:
| Q |
138 |
acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga |
213 |
Q |
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| T |
208186 |
acagagatcacatgatgccatttaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga |
208111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 213238 - 213163
Alignment:
| Q |
138 |
acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga |
213 |
Q |
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| T |
213238 |
acagagatcacatgatgccatctaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga |
213163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 48624 - 48549
Alignment:
| Q |
138 |
acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga |
213 |
Q |
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| T |
48624 |
acagagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcatgtgttcaaggaacacatga |
48549 |
T |
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Target: scaffold0077; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 58379 - 58304
Alignment:
| Q |
138 |
acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga |
213 |
Q |
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| T |
58379 |
acagagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcatgtgttcaaggaacacatga |
58304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 41931940 - 41932015
Alignment:
| Q |
138 |
acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga |
213 |
Q |
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| T |
41931940 |
acagagatcacatgatgccatgtaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga |
41932015 |
T |
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