View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12888_low_2 (Length: 566)
Name: NF12888_low_2
Description: NF12888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12888_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 131 - 547
Target Start/End: Original strand, 44634602 - 44635028
Alignment:
| Q |
131 |
gcaaagcatacatacaaaagagatttgagaggagtgagatcaattttttagcaagtgaacttaagaaggattgttaggattcccatataaagtgatgagt |
230 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44634602 |
gcaaagcatacataaaaaagagatttgagaggagtgagatcaattttttagcaagtgaacttaagaaggattgttaggattcccatataaagtgatgagt |
44634701 |
T |
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| Q |
231 |
ctttgattgactaatttttcgggttat-----------cccttgctggtgggattgttgcgccccacattcagcttccgtctccccttcttggcatgatc |
319 |
Q |
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| T |
44634702 |
ctttgattgtctaatttttcgggttatgcatgataactcccttgctggtgggattgttgcgccccacattcagcttccgtctctccttcttggcatgatc |
44634801 |
T |
|
| Q |
320 |
cataaacaagatctttaatacgtaaccttatggaaatcgtgtgttctacctcatttctcaaag-gtcaaacaatggcttgtgaaatggaaggatagagta |
418 |
Q |
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| T |
44634802 |
cataaacaagatctttaatacgtaaccttatggaaatcgtgtgttctacctcatttctcaaagtgtcaaacaatggcttgtgaaatggaaggatagagta |
44634901 |
T |
|
| Q |
419 |
gttgaggtgggaacctatgtttactgttctgttactatctatcaccttcaatttaaataaatatgtagaaacatttgcgatcctgttttaggtgggatga |
518 |
Q |
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| T |
44634902 |
gttgaggtgggaacc--tgtttactgttctgttactatctatcaccttcaatttaaataaatatgtagaaacatttgcgatcctgttttaggtgggatga |
44634999 |
T |
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| Q |
519 |
acgtaggaagtagttttcagcattttgaa |
547 |
Q |
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| T |
44635000 |
acgtaggaagtagttttcagcattttgaa |
44635028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 44634364 - 44634479
Alignment:
| Q |
19 |
gatatgtcaaccgaaaagaagagtgatcaggctaagcacattttgagataaagatgatccaatttagttcaattcaatatatatacatgaaatacattat |
118 |
Q |
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| T |
44634364 |
gatatgtcaaccgaaaagaagagtgatcaggctaagcgcattttgagataaagatgattcaatttagatcaattcaatatatatacatgaaatacattat |
44634463 |
T |
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| Q |
119 |
gaataaaaaagggcaa |
134 |
Q |
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| T |
44634464 |
gaataaaaaagggcaa |
44634479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 44398043 - 44398109
Alignment:
| Q |
134 |
aagcatacatacaaaagagatttgagaggagtgagatcaattttttagcaagtgaacttaagaaggattgt |
204 |
Q |
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| T |
44398043 |
aagcatacatacaaaagagatttggaaggagtgagatga----tttagcaagtgaacttaagaaggattgt |
44398109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 44397891 - 44397923
Alignment:
| Q |
95 |
atatatatacatgaaatacattatgaataaaaa |
127 |
Q |
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| T |
44397891 |
atatatatacatgaaatacattatgaaaaaaaa |
44397923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 49128650 - 49128715
Alignment:
| Q |
37 |
aagagtgatcaggctaagcacattttgagataaagatgatccaatttagttcaattcaatatatat |
102 |
Q |
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| T |
49128650 |
aagagggatcaagctaagcatatgttgagataaagatgcaccaatttagttcaattcaatgtatat |
49128715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 49129234 - 49129312
Alignment:
| Q |
134 |
aagcatacatacaaaagagatttgagaggagtgagatcaattttttagcaagtgaacttaagaaggattgttaggattc |
212 |
Q |
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| T |
49129234 |
aagcatacatgtaaaagagagtttaaatgagtgagatgaactttttagcaagtgaacttaagaaacattgctaggattc |
49129312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 541
Target Start/End: Original strand, 34317147 - 34317190
Alignment:
| Q |
498 |
atcctgttttaggtgggatgaacgtaggaagtagttttcagcat |
541 |
Q |
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| T |
34317147 |
atcctattttaggtgggatggacataggaagtagttttcagcat |
34317190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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