View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12888_low_3 (Length: 519)
Name: NF12888_low_3
Description: NF12888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12888_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 74 - 515
Target Start/End: Original strand, 35035578 - 35036014
Alignment:
| Q |
74 |
acatgcagagaagccaacatctgaacaatcctccctnnnnnnnnnntt-gaacatcacattacaggcttacagctctaacaataatttctaacgccaatt |
172 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035578 |
acatgcagagaagccaacatctgaacaatcctccctaaaaaaaaaatttgaacatcacattacaggcttacagctctaacaataatttctaacgccaatt |
35035677 |
T |
|
| Q |
173 |
atggatgtgatgaataatttgttctcactatcaacattgccatttacaatctgcattttgttgcttctctttgttctcttttcactacgtagaagcaata |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35035678 |
atggatgtgatgaataatttgttctcactatcaacattgccatttacaatctgcattttgttgcttctctttgttctcttttcgctacgtagaagcaata |
35035777 |
T |
|
| Q |
273 |
ttactacgggtgcagcttcaatgacaccaccaccaccacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggtggttcccaaca |
372 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035778 |
ttactacgggtgcagcttcaatgacacc------accacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggtggttcccaaca |
35035871 |
T |
|
| Q |
373 |
accttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccgtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaatt |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035872 |
accttatatcaccttgggaaacttagccgacaaatacggagccatcttcacagtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaatt |
35035971 |
T |
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| Q |
473 |
gctagacagtgtttcactgtaaacgacaaagcctttgcttctc |
515 |
Q |
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| T |
35035972 |
gctagacagtgtttcactgtaaacgacaaagcctttgcttctc |
35036014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 329 - 513
Target Start/End: Original strand, 35019629 - 35019813
Alignment:
| Q |
329 |
tggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccgtgc |
428 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||||||| ||||||||||||| | |
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| T |
35019629 |
tggccgttaatcggccacctccacctcttaggtggttcccaaccacctcacgtcaccttaggaaacttagccgacaaatacggacccatcttcaccgttc |
35019728 |
T |
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| Q |
429 |
gtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttc |
513 |
Q |
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| T |
35019729 |
gtttaggtgttcacaaaaccttagtagtaagcagttatgaaatggtgaaacagtgttttaccgtaaacgacaaaacttttgcttc |
35019813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 287 - 513
Target Start/End: Original strand, 35029678 - 35029905
Alignment:
| Q |
287 |
gcttcaatgacaccaccaccaccacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcacct |
386 |
Q |
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||||||| |||||||||||| || || ||||| || || ||||| ||||| ||||||||||||||||||||||| ||||||| |||| | | |||| |
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| T |
35029678 |
gcttcaaagacaccaccaccgccgccagaagccagcggagcatggccgttaattggccacctccacctcttaggtgggtcccaaccacctcacgttacct |
35029777 |
T |
|
| Q |
387 |
tgggaaacttagccgacaaatacggagccat-cttcaccgtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtt |
485 |
Q |
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| |||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||| |||||||| ||||||| ||||| | | ||| |||| |
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| T |
35029778 |
taggaaacttagccgacaaatacggacccatccttcaccgttcgtttaggtgttcacaaaaccttagttgtaagcagttatgaaatggtgaaacaatgtt |
35029877 |
T |
|
| Q |
486 |
tcactgtaaacgacaaagcctttgcttc |
513 |
Q |
| |
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|||| ||||| |||||| | |||||||| |
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| T |
35029878 |
tcaccgtaaatgacaaaacttttgcttc |
35029905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 326 - 515
Target Start/End: Original strand, 35043986 - 35044175
Alignment:
| Q |
326 |
gcttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccg |
425 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||| | |||| || ||||||| || || ||||||| ||||||||| | ||||||||| |
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| T |
35043986 |
gcttggcctttgatcggccacctccacctcttaggtggatcccagccacctcatgtcaccttagggaagctagccgataaatacggacctatcttcacct |
35044085 |
T |
|
| Q |
426 |
tgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctc |
515 |
Q |
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| ||||| |||||||| ||| ||||| | |||||||| ||||| || | ||| || |||||||||||||| | |||||||||||||| |
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| T |
35044086 |
ttcgttttggtgttcacaaaacactagttataagcagttgtgaaatggcgaaacaatgcttcactgtaaacgatagagcctttgcttctc |
35044175 |
T |
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