View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12889_high_5 (Length: 209)
Name: NF12889_high_5
Description: NF12889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12889_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 51732872 - 51733065
Alignment:
| Q |
16 |
cttgtatgttccttcatacttttgtacatacaagttgcttaaaaagaaaaagaaacgtgtattgaattaggaaattatgatatgagacataaaagcatta |
115 |
Q |
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| T |
51732872 |
cttgtatgttccttcatacttttgtacatacaagttgcttaaaaagaaaaagaaacgtggattgaattaggaaattatgatatgagacataaaagcatta |
51732971 |
T |
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| Q |
116 |
attttgtcttgaaaatcatacagcctcttgaaactgcaatttcatgtgctgaacttcatcggaggagcattgcacagatgcgggtgagctatca |
209 |
Q |
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| T |
51732972 |
attttgtcttgaaaatcatacagcctcttgaaactgcaatttcatgtgctgaacttcatcggaggagcattgcacagatgcgggtgagctatca |
51733065 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 355941 - 356013
Alignment:
| Q |
128 |
aaatcatacagcctcttgaaactgcaatttcatgtgctgaacttcatcggaggagcattgcacagatgcgggt |
200 |
Q |
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| T |
355941 |
aaatcatacagcctcctcagactgcagctacacgtgctgaacttcatcgaaggagcattgcacaaatgagggt |
356013 |
T |
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