View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12889_low_1 (Length: 355)
Name: NF12889_low_1
Description: NF12889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12889_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 40621635 - 40621959
Alignment:
| Q |
12 |
aacctgtgaaaaaacccatcacaaaacataaagaaaaatgaagcattgctttcttccataaatgggnnnnnnnctttgaactttctactaaacacatctt |
111 |
Q |
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| T |
40621635 |
aacctgtgaaaaaacccatcacaaaacataaagaaaaatgaagcattgctttcttccataaatgggtttttttctttgacctttctactaaacccatctt |
40621734 |
T |
|
| Q |
112 |
ctgaagaagaagaagnnnnnnnttgaccacaaaattcaggttgaaatggaataaaattgagtaattgttggaacagaatgaaggaaagggttttataata |
211 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
40621735 |
ctgaagaagaagaagaaaaaaattgaccacaaaattcaggttgaaatggaataaaattgaataattgttggaacagaatgaagggaagggttttataata |
40621834 |
T |
|
| Q |
212 |
ataatgtaatataaagtatatagtttaggtgaatttgtggcagcacatatttgttaatggaaacgtttgaaatgttgaggttatgattggtactaccaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40621835 |
ataatgtaatataaagtatatagtttaggtgaatttgtggcagcacatatttgttaatggaaacgtttgaaatgttgaggttatgattggtactaccaaa |
40621934 |
T |
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| Q |
312 |
ctaaaatattagcttttgtttggag |
336 |
Q |
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||||||||||||||||||||||||| |
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| T |
40621935 |
ctaaaatattagcttttgtttggag |
40621959 |
T |
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