View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12889_low_2 (Length: 259)
Name: NF12889_low_2
Description: NF12889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12889_low_2 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 10862547 - 10862303
Alignment:
| Q |
1 |
atgtcaagagcaaaaccatatatcggcccattgtgaaggaaaagaacttcagtgataattctagaaatctcagggccagggtcatcaagatcctcaaacc |
100 |
Q |
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| T |
10862547 |
atgtcaagagcaaaaccatatatcggcccattgtgaaggaaaagaacttcagtgataattctagaaatctaagggccagggccatcatgatcctcaaacc |
10862448 |
T |
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| Q |
101 |
tactaaaaaagtcctcgtcgaacaaaagtggttcgtgttggactgaagtccacatatacctccattttctagacagaatactggtac----taactagct |
196 |
Q |
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| T |
10862447 |
ttctaaaaaagtccttgtcgaataaaaggtgttcgtatcaaactgaagtccacatatagctccattttcttgacagaatactggtactaattaactagct |
10862348 |
T |
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| Q |
197 |
cttggatgctcaagtgttttacgatgccatcaatgacattacatg |
241 |
Q |
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| T |
10862347 |
cttggatgctcaagtgttttaggatgccatcaatgacattacatg |
10862303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 40011154 - 40011252
Alignment:
| Q |
140 |
ggactgaagtccacatatacctccattttctagacagaatactggtactaactagctcttggatgctcaagtgttttacgatgccatcaatgacattac |
238 |
Q |
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| T |
40011154 |
ggactgtaatccacatatacctccactttctagacagaacactagtcctcactaggtctcgggcgttcaagtgttctaggatgccatcgatgacattac |
40011252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 40011044 - 40011093
Alignment:
| Q |
18 |
atatatcggcccattgtgaaggaaaagaacttcagtgataattctagaaa |
67 |
Q |
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| T |
40011044 |
atatatcggtccattgtggaggaaaagaacttccgtgataattcttgaaa |
40011093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 3488 - 3705
Alignment:
| Q |
18 |
atatatcggcccattgtgaaggaaaagaacttcagtgataattctagaaatctcagggccagggtcatcaagatcctcaaacctactaaaaaagtcctcg |
117 |
Q |
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| T |
3488 |
atatatcggcccattgtggagtaaaagaatttcggtgataattctagaaatctcagggccagggtcattaagatcctcgaacctacaaaagaagtcctc- |
3586 |
T |
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| Q |
118 |
tcgaacaaaagtg--gttcgtgttggactgaagtccacatatacctccattttctagacagaatactggtactaactagctcttggatgctcaagtgttt |
215 |
Q |
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| T |
3587 |
----acaaaattgaagtt---gtgggactgaattccacatatacctccactttctagacagaagactggtactaactagctcttgaatgttcaagcgttc |
3679 |
T |
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| Q |
216 |
tacgatgccatcaatgacattacatg |
241 |
Q |
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| T |
3680 |
taggatgccatcaatgacattacatg |
3705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 16865462 - 16865368
Alignment:
| Q |
144 |
tgaagtccacatatacctccattttctagacagaatactggtactaactagctcttggatgctcaagtgttttacgatgccatcaatgacattac |
238 |
Q |
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| T |
16865462 |
tgaaatccatatatccctccactttctagatagaatactggtcctagctaggtctcggatgttcaggtgttgtagaatgccatcaatgacattac |
16865368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 16865585 - 16865530
Alignment:
| Q |
21 |
tatcggcccattgtgaaggaaaagaacttcagtgataattctagaaatctcagggc |
76 |
Q |
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| T |
16865585 |
tatcggcccattgtggagcaaaagaacttccgtgataattatacaaacctcagggc |
16865530 |
T |
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