View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12889_low_6 (Length: 205)
Name: NF12889_low_6
Description: NF12889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12889_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 14061050 - 14060880
Alignment:
| Q |
21 |
aagttgtaacttacatactacttaattaaccattggatcatgactcatacgcttatggataaaaggatttcccaactaaaagaggcacaactgaagtttg |
120 |
Q |
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| T |
14061050 |
aagttgtaacttacatactacttaattaaccattggatcatgactcatacgcttatggataaaaggatttcccaactaaaagaggcacaactgaagtttg |
14060951 |
T |
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| Q |
121 |
agaaaaatagtcaaatttcaattcctaagattcaaagggttcctaagtttttgcgacaaaatgaaagattt |
191 |
Q |
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| T |
14060950 |
agcaaaatagtaaaatttcaattcctaagattcaaagggttcctaagtttttgcgacaaaatgaaagattt |
14060880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 14049640 - 14049495
Alignment:
| Q |
46 |
ttaaccattggatcatgactcatacgcttatggataaaaggatttcccaactaaaagaggcacaactgaagtttgagaaaaatagtcaaatttcaattcc |
145 |
Q |
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| T |
14049640 |
ttaaccattggatcatgactcatacacttacggataaaaggctttcccaactaaaagaggtacaactaaagtttgagcaaaatagtcaaatttcaattcc |
14049541 |
T |
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| Q |
146 |
taagattcaaagggttcctaagtttttgcgacaaaatgaaagattt |
191 |
Q |
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| T |
14049540 |
taagatccaaagggttccaaagtttttgagacaaaatgaaagattt |
14049495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 15874582 - 15874465
Alignment:
| Q |
74 |
tatggataaaaggatttcccaactaaaagaggcacaactgaagtttgagaaaaatagtcaaatttcaattcctaagattcaaagggttcctaagtttttg |
173 |
Q |
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| T |
15874582 |
tatggataaaagactttcgcaactcaaagaggcacaagaaaggtttgatcgaaataatcgaatttcgattcctaagatccaaagggttccaatatttttg |
15874483 |
T |
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| Q |
174 |
cgacaaaatgaaagattt |
191 |
Q |
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| T |
15874482 |
cggcaaaatgaaagattt |
15874465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 15899487 - 15899604
Alignment:
| Q |
74 |
tatggataaaaggatttcccaactaaaagaggcacaactgaagtttgagaaaaatagtcaaatttcaattcctaagattcaaagggttcctaagtttttg |
173 |
Q |
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| T |
15899487 |
tatggataaaaggctttcgcaactcaaagaggcacaagaaaggtttgatcgaaataatgaaattttgattcctaggatccaaagggttccaatgtttttg |
15899586 |
T |
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| Q |
174 |
cgacaaaatgaaagattt |
191 |
Q |
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| T |
15899587 |
cggcaaaatgaaagattt |
15899604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 15920515 - 15920632
Alignment:
| Q |
74 |
tatggataaaaggatttcccaactaaaagaggcacaactgaagtttgagaaaaatagtcaaatttcaattcctaagattcaaagggttcctaagtttttg |
173 |
Q |
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||||||||||||| |||| ||||| |||||||||||| | |||||| ||||| | |||||| ||||||| ||| ||||||||||| | ||||||| |
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| T |
15920515 |
tatggataaaaggctttcacaactcaaagaggcacaagaaaggtttgatcgaaataatgaaattttgattcctaggatccaaagggttccaatgtttttg |
15920614 |
T |
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| Q |
174 |
cgacaaaatgaaagattt |
191 |
Q |
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| T |
15920615 |
cggcaaaatgaaagattt |
15920632 |
T |
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