View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1288_high_10 (Length: 479)
Name: NF1288_high_10
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 606551 - 606114
Alignment:
| Q |
13 |
aatattgaagccccagaaactttcttcccattcggagtataatatccatgactagtattccctccagaaggagtatccaaccccataattcgatccccgg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
606551 |
aatattgaagccccagaaactttcttcccattcggagtataatatccatgactagtattccctccagaaggagtatccaaccccataattcgatccccgg |
606452 |
T |
|
| Q |
113 |
gcgccaacaatccagtatacacagcaaaattagccgaagtacacgaatatggctgcacattcacaccccaacacttaggatcaagattaaacgcagccaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
606451 |
gcgccaacaatccagtatacacagcaaaattagccgaagtacacgaatatggctgcacattcacaccccaacacttaggatcaagattaaacgcagccaa |
606352 |
T |
|
| Q |
213 |
agcacgctcgcaacaaagtgtttcaatttcatctatatattgatttccaccatagtaacgtgcaccaggcattccttcagagtatttattcgttaaatgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
606351 |
agcacgctcgcaacaaagtgtttcaatttcatctatatattgatttccaccatagtaacgtgcaccaggcattccttcagagtatttattcgttaaatgg |
606252 |
T |
|
| Q |
313 |
cttccaagcgcttccattacagccctgcaaacaaaattctcagaagctatcaattcaatccctttgaattgacgctttttctctttttctataatctcat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
606251 |
cttccaagcgcttccattacagccctgcaaacaaaattctcagaagctatcaattcaatccctttgaattgacgctttttctctttttctataatctcat |
606152 |
T |
|
| Q |
413 |
atatatcaggatccgctacctgtaagggttgatcaccc |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
606151 |
atatatcaggatccgctacctgtaagggttgatcaccc |
606114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 33130669 - 33130572
Alignment:
| Q |
280 |
ggcattccttcagagtatttattcgttaaatggcttccaagcgcttccattacagccctgcaaacaaaattctcagaagctatcaattcaatcccttt |
377 |
Q |
| |
|
|||||||| || || || ||||| || ||||| || ||||| |||||||| |||||||| |||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
33130669 |
ggcattccctctgaatacttattagtcaaatgactaccaagtgcttccatcacagccctacaaacaaaattctcagaagcaattaattcaattccttt |
33130572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 33130862 - 33130766
Alignment:
| Q |
87 |
atccaaccccataattcgatccccgggcgccaacaatccagtatacacagcaaaattagccgaagtacacgaatatggctgcacattcacaccccaa |
183 |
Q |
| |
|
||||||||||||||| | |||||| || ||| | |||||||| |||||||||||||| ||||| || ||||| ||||| ||||| ||||||||| |
|
|
| T |
33130862 |
atccaaccccataatcctatccccaggattcaaaagaccagtataaacagcaaaattagctgaagtgcatgaataaggctgaacattaacaccccaa |
33130766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University