View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_high_16 (Length: 430)
Name: NF1288_high_16
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 30 - 422
Target Start/End: Original strand, 42392905 - 42393297
Alignment:
| Q |
30 |
agacaaatacttgaaaattgttaaaaactccagcaatgataaatggtgctctccgtaagtagaagctcattgaattgctattcttaacaatattgaagtt |
129 |
Q |
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| T |
42392905 |
agacaaatacttgaaaattgttaaaaactctagcaatgatcaatggtgctctccgtaagtagaagctcgttgaattgctattcttaacaacattgaagtt |
42393004 |
T |
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| Q |
130 |
ttgaacaattttcaagcatcaacaatcatagaatacacacgacactttccctccctatcaattaccctatattgtaatatgaagagtgaatatagtaccc |
229 |
Q |
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| T |
42393005 |
ttgaacaattttcaagcatcaacaatcatagaatacacacgacactttccctccctatcaattaccctatatggtaatatgaatagtgaatatagtatcc |
42393104 |
T |
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| Q |
230 |
aaatctatttataaagatctggattggacagtcgtggtgtaggtatggcaagcaaaggtgtcttctttttgagaatgataccatatttctctgatacatc |
329 |
Q |
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| T |
42393105 |
aaatctatttataaagatctggattggacagtcgtggtgtaggtatggcaagcaaaggtgtcttctttttgagaatgataccatatttctctaatacatc |
42393204 |
T |
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| Q |
330 |
caacttttctccttgaggtattgtccaatcaaacgagtgcataagggtggctataaagtacaaaacattcctctcagccattgctattccagc |
422 |
Q |
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| T |
42393205 |
caacttttctccttgaggtattgtccaatcaaacgagtgcataagggtggctataaagtacaaaacattcctctcagccattgctattccagc |
42393297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 121 - 419
Target Start/End: Original strand, 42376447 - 42376742
Alignment:
| Q |
121 |
attgaagttttgaacaatttt-caagcatcaacaatcatagaatacacacgacactttccctccctatcaattaccctatattgtaatatgaagagtgaa |
219 |
Q |
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| T |
42376447 |
attgaagttttgaacaattttacaagcatcaacaatcgtagaatacacac---actttcccaacctaccaattgct-tatatgataatatgaatagtgaa |
42376542 |
T |
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| Q |
220 |
tatagtacccaaatctatttataaagatctggattggacagtcgtggtgtaggtatggcaagcaaaggtgtcttctttttgagaatgataccatatttct |
319 |
Q |
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| T |
42376543 |
tataatattcgattctatttataaagatctggatttgacagtcgtggtgtgggtatggcaagcagaggtgtcttcttttttagaacaataccaaatttct |
42376642 |
T |
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| Q |
320 |
ctgatacatccaacttttctccttgaggtattgtccaatcaaacgagtgcataagggtggctataaagtacaaaacattcctctcagccattgctattcc |
419 |
Q |
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| T |
42376643 |
ccgacacctccagattttctccttgaggaactgtccaatcaaacaagtgcacaagggtggctacaaagtacaaaaccgtcctctcagccattgctattcc |
42376742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 238 - 419
Target Start/End: Original strand, 42386957 - 42387138
Alignment:
| Q |
238 |
ttataaagatctggattggacagtcgtggtgtaggtatggcaagcaaaggtgtcttctttttgagaatgataccatatttctctgatacatccaactttt |
337 |
Q |
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||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||||| |||| |
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| T |
42386957 |
ttataaagatctggattagacagtcgtgttgtgggtatggcaagcaaaggcgtcttcttttttagaacgataccaaatttctctgatacatccatatttt |
42387056 |
T |
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| Q |
338 |
ctccttgaggtattgtccaatcaaacgagtgcataagggtggctataaagtacaaaacattcctctcagccattgctattcc |
419 |
Q |
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| T |
42387057 |
ctccttgaggaactgtccaatcaaacaagtgcacaagggtggctacaaagtacaaaaccgtcctctcagacattgctattcc |
42387138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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