View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1288_high_17 (Length: 427)
Name: NF1288_high_17
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 98 - 420
Target Start/End: Original strand, 2215503 - 2215825
Alignment:
| Q |
98 |
tcttagctggggtgaagcggctattggagaatgtcaatgataaagtaagtatttatcttttatatttcatttgtaactacatgaaattgaatgcactgag |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215503 |
tcttagctggggtgaagcggctattggagaatgtcaatgataaagtaaatatttatcttttatatttcatttgtaactacatgaaattgaatgcactgag |
2215602 |
T |
|
| Q |
198 |
cacttcgtatgcacaatttcttttcatttaatttatgcatattatatatctaatttcaaagctctggatgtagnnnnnnnnnnnnnnnnnnncaggttta |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2215603 |
cacttcgtatgcacaatttcttttcatttaatttatgcatattatatatctaatttcaaagctctggatgtagttttttttctttttcttttcaggttta |
2215702 |
T |
|
| Q |
298 |
agatactaaacgctcaagtgtcctttctttgacttacaaaatctcccctcttttttctttgtttacagttgaccgagaaggatgtgtacttatcatacct |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215703 |
agatactaaacgctcaagtgtcctttctttgacttacaaaatctcccctcttttttctttgtttacagttgaccgagaaggatgtgtacttatcatacct |
2215802 |
T |
|
| Q |
398 |
tcctctcgcacatacctatgata |
420 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
2215803 |
tcctctcgcacatacctttgata |
2215825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 98 - 409
Target Start/End: Original strand, 2202906 - 2203197
Alignment:
| Q |
98 |
tcttagctggggtgaagcggctattggagaatgtcaatgataaagtaagtatttatcttttatatttcatttgtaactacatgaaattgaatgcactgag |
197 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| || |||| | |||||||| |
|
|
| T |
2202906 |
tcttagctggggtgaagcgactattggagagtgtcaatgaaaaagtaagtatttatcttttatatttcactt------------aattta-tgcactgaa |
2202992 |
T |
|
| Q |
198 |
cacttcgtatgcacaatttcttttcatttaatttatgcatattatatatctaatttcaaagctctggatgtagnnnnnnnnnnnnnnnnnnncaggttta |
297 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
2202993 |
cactccctatgcacaatttcttttcatttaatttttgcatattatatttctaatttcaaagctctggatatagttttttttttccgg-------ggttta |
2203085 |
T |
|
| Q |
298 |
agatactaaacgctcaagtgtcctttctttgacttacaaaatctcccctcttttttctttgtttacagttgaccgagaaggatgtgtacttatcatacct |
397 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2203086 |
agatactatatgcttaagtgtcctttctttgacttacaaaatctcccctcttttttctttctttacagttgactgagaaggatgtgtacttatcatacct |
2203185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 779566 - 779467
Alignment:
| Q |
5 |
cactttccccatccttcttctccgtcccaaccccggacttctcatcgtttaattttttctccgcagcagcctttgctttctcctgggcagcaatcttagc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
779566 |
cactttccccatccttcttctccgtcccaaccccggacttctcatcgttcacttttatccccgcagcagcctttgctttctcctgggaagcaatcttagc |
779467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 772016 - 772082
Alignment:
| Q |
38 |
cggacttctcatcgtttaattttttctccgcagcagcctttgctttctcctgggcagcaatcttagc |
104 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
772016 |
cggacttctcatcgttcaattttttctcagcagcagcctttgctttctccttagcagcaatcttagc |
772082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University