View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_high_23 (Length: 342)
Name: NF1288_high_23
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 31704801 - 31704505
Alignment:
| Q |
12 |
acagagttatatttctttccctttctgtcacacaaagcaacagaccgaaatccatgtcttagctctgatactggcaaacaagtctgtccagcaaaatcat |
111 |
Q |
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| T |
31704801 |
acagagttatatttctttccctttctgtcacacaaagcaacagaccgaaatccatgtcttagctctgatactggcaaacaagtctgtccagcaaaatcat |
31704702 |
T |
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| Q |
112 |
cttttgtctgatctttatcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaatgggattccaatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31704701 |
cttttgtctgatctttatcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaatgggattccaatt |
31704602 |
T |
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| Q |
212 |
gtccatctttacacttgttttcttcttggcacaatcagctctcactccagcaatagaaacctgtcacatagttttatatatgatcagacagtaacat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31704601 |
gtccatctttacacttgttttcttcttggcacaatcagctctcactccagcaatagaaacctgtcacatagttttgtatatgatcagacagtaacat |
31704505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 31654433 - 31654168
Alignment:
| Q |
12 |
acagagttatatttctttccctttctgtcacacaaagcaacagaccgaaatccatgtcttagctctgatactggcaaacaagtctgtccagcaaaatcat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |
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| T |
31654433 |
acagagttatatttctttccctttctgtcacacaaagcaacagaccgaaatccatgtcttagctctgatacaggcaaacaagtttgtccagcaaaatcgt |
31654334 |
T |
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| Q |
112 |
cttttgtctgatctttatcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaatgggattccaatt |
211 |
Q |
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| T |
31654333 |
ctgatcccttatctttatctttcacttcgatccggagcaatgcaagctctggaacagtcaattggaattcgaactcttcgtcccaaacaggataccaatt |
31654234 |
T |
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| Q |
212 |
gtccatctttacacttgttttcttcttggcacaatcagctctcactccagcaatagaaacctgtca |
277 |
Q |
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|||||||||||||||||||||| |||| ||| |||||||| ||||||||||||| |||||||||| |
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| T |
31654233 |
gtccatctttacacttgttttcatcttcacactatcagctcccactccagcaatacaaacctgtca |
31654168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 122 - 291
Target Start/End: Complemental strand, 31717903 - 31717734
Alignment:
| Q |
122 |
atctttatcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaatgggattccaattgtccatcttt |
221 |
Q |
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| T |
31717903 |
atctttatccttcactgcgatccggagcaaagcgagctccggatcactcaaacgggatttgaacacttcgtcccaaataggataccagttgtccgtctct |
31717804 |
T |
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| Q |
222 |
acacttgttttcttcttggcacaatcagctctcactccagcaatagaaacctgtcacatagttttatata |
291 |
Q |
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| T |
31717803 |
actcttgttttcttcttaacacaatcagctcccactccaacaatacaaatctgtcacgcagttttatata |
31717734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 31717969 - 31717917
Alignment:
| Q |
18 |
ttatatttctttccctttctgtcacacaaagcaacagaccgaaatccatgtct |
70 |
Q |
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||||||||||||||||||||||| |||||||||||| ||| |||||| ||||| |
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| T |
31717969 |
ttatatttctttccctttctgtcgcacaaagcaacaaaccaaaatccttgtct |
31717917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 44901234 - 44901421
Alignment:
| Q |
12 |
acagagttatatttctttccctttctgtcacacaaagcaacagaccgaaatccatgtcttagctctgatactggcaaacaagtctgtccagcaaaatcat |
111 |
Q |
| |
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||||||||| ||||||| ||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||||||| |||||||| | |||||||| |
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| T |
44901234 |
acagagttaaatttcttcccctttcagtcacacaaacgaacaaaccgaaatccatgtcttagctctgatacaggcaaacaggtctgtccggaaaaatcat |
44901333 |
T |
|
| Q |
112 |
cttttgtctgatctttatcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaat |
199 |
Q |
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|| | ||| |||||||||||| | ||||||| ||||||| || ||||| |||| || || ||||| ||||||||||||||||||| |
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| T |
44901334 |
ctgtcgtcatatctttatccttcagttcgatctggagcaaagcaagctctggaatggttaatcggaatacaaactcttcgtcccaaat |
44901421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 44901425 - 44901488
Alignment:
| Q |
224 |
acttgttttcttcttggcacaatcagctctcactccagcaatagaaacctgtcacatagttttata |
289 |
Q |
| |
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||||||||||||||| |||| ||||||| ||||||| ||||| |||||||||||| | ||||||| |
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| T |
44901425 |
acttgttttcttctt--cacagtcagctcccactccaacaatacaaacctgtcacacaattttata |
44901488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 35510812 - 35510755
Alignment:
| Q |
59 |
aaatccatgtcttagctctgatactggcaaacaagtctgtccagcaaaatcatctttt |
116 |
Q |
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| T |
35510812 |
aaatccaagttttatctctgaaactggcaaacatgtttgtccagcaaagtcatctttt |
35510755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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