View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_high_26 (Length: 319)
Name: NF1288_high_26
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_high_26 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 31705083 - 31704779
Alignment:
| Q |
13 |
aatatcggtatttttgttaattgagttgggttttatggacaaaattggtagttcttaattaaagttgttttgtacttttgttattaatatatagatatag |
112 |
Q |
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| T |
31705083 |
aatatcggtattt--gttaattgagttgggttttatggacaaaattggtagttcttaattaaagttgttttgtacttttgttattaatatatagatatag |
31704986 |
T |
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| Q |
113 |
attgagcagaaatgataacattaacacagtaatgaaagcccacaaatactattttcaagcagctcaacatataaagataaatatcattatgctcctaaac |
212 |
Q |
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| T |
31704985 |
attgagcagaaatgataacattaacacagtaatgaaagcccacaaatactattttcaagcagctcaacatataaagataaatatcattatgctcctaaac |
31704886 |
T |
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| Q |
213 |
aaaaagatcttataatatagatacttagattaaccacattacaacattttcaaagtttctagttggaatccaagtaaaagcttcacagagttatatttct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31704885 |
aaaaagatcttataatatagatacttagattaaccatattacaacattttcaaagtttctagttggaatccaagtaaaagcttgacagagttatatttct |
31704786 |
T |
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| Q |
313 |
ttccctt |
319 |
Q |
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||||||| |
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| T |
31704785 |
ttccctt |
31704779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 31654466 - 31654411
Alignment:
| Q |
264 |
aaagtttctagttggaatccaagtaaaagcttcacagagttatatttctttccctt |
319 |
Q |
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|||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31654466 |
aaagtttcaaggtggaatccaagtaaaagcttgacagagttatatttctttccctt |
31654411 |
T |
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