View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1288_high_3 (Length: 656)

Name: NF1288_high_3
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1288_high_3
NF1288_high_3
[»] chr2 (6 HSPs)
chr2 (7-534)||(7127519-7128051)
chr2 (391-521)||(7133173-7133303)
chr2 (229-309)||(7124060-7124141)
chr2 (311-396)||(7124614-7124697)
chr2 (311-384)||(7133078-7133151)
chr2 (139-171)||(33390660-33390692)
[»] chr1 (3 HSPs)
chr1 (536-654)||(779449-779566)
chr1 (537-591)||(772045-772099)
chr1 (102-157)||(7210679-7210735)
[»] chr4 (1 HSPs)
chr4 (101-161)||(41364965-41365026)
[»] chr7 (1 HSPs)
chr7 (105-162)||(739259-739316)
[»] chr6 (1 HSPs)
chr6 (101-157)||(431028-431085)
[»] chr5 (1 HSPs)
chr5 (18-81)||(42273387-42273449)
[»] chr8 (2 HSPs)
chr8 (104-161)||(29749271-29749329)
chr8 (104-137)||(32616835-32616868)


Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 7 - 534
Target Start/End: Original strand, 7127519 - 7128051
Alignment:
Q  7 tccaataatatttcaatcaaacttaaatcattttttgaaaacacttcgtagcttgcttaatttagaaaagaaaaataatcctgcacctcccctcatattg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127519 tccaataatatttcaatcaaacttaaatcattttttgaaaacacttcgtagcttgcttaatttagaaaagaaaaataatcctgcacctcccctcatattg 7127618  T
Q  107 ttaaatagcgcctatagcagcgctatagcatgttgcatagcagaatttgaacaaatcgttattgtcctacaatagtgctgggcagagtccatcgcagcaa 206  Q
    |||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7127619 ttaaatagcgcctat-----------agcatgttgcatagcagaatttgaacaaatcgttattgtcctacaatagtgctgggcagagtccattgcagcaa 7127707  T
Q  207 catctgtgtgtttatttcgattctgcaacaaatcagaaaagtcacagcctgcttagaatcctttgctagttcgcgaatccaaaaccatggtgccgatgct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127708 catctgtgtgtttatttcgattctgcaacaaatcagaaaagtcacagcctgcttagaatcctttgctagttcgcgaatccaaaaccatggtgccgatgct 7127807  T
Q  307 ctaaaatggacttgatacagagcttaacttcttccgggaggcaattcaaacgatcctctagccaacaacaatcaatatctaat----------------a 390  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |    
T  7127808 ctaaaatggacttgatacggagcttaacttcttccgggaggcaattcaaacgatcctctagccaacaacaatcaatatctaatagccactttcgtataca 7127907  T
Q  391 gccactcaatcggaatattgtcaaccaattctgcaatacataaagtttcactatccaacaaccacttcaagagttagcagttaaaccatcaccaatagac 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127908 gccactcaatcggaatattgtcaaccaattctgcaatacataaagtttcactatccaacaaccacttcaagagttagcagttaaaccatcaccaatagac 7128007  T
Q  491 caataagatgtaagattcctctctattttccccttcaaagccct 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7128008 caataagatgtaagattcctctctattttccccttcaaagccct 7128051  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 391 - 521
Target Start/End: Original strand, 7133173 - 7133303
Alignment:
Q  391 gccactcaatcggaatattgtcaaccaattctgcaatacataaagtttcacta-tccaacaaccacttcaagagttagcagttaaaccatcaccaataga 489  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| |||||||| ||||| ||| ||| |||| ||||||| |||||||||||||||||||    
T  7133173 gccactcaatcagaatattgtcaaccacttctgcaatacataaa-tttcactactccaaaaactactccaagcgttagcatttaaaccatcaccaataga 7133271  T
Q  490 ccaataagatgtaagattcctctctattttcc 521  Q
    | ||||||||| |||||| |||||||||||||    
T  7133272 caaataagatgaaagatttctctctattttcc 7133303  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 7124060 - 7124141
Alignment:
Q  229 ctgcaacaaatcagaaaa-gtcacagcctgcttagaatcctttgctagttcgcgaatccaaaaccatggtgccgatgctcta 309  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| ||||    
T  7124060 ctgcagcaaatcagaaaaagtcacagcctgcttagaatcctttgctagtttgcgaacccaaaaccaaggcgccgatggtcta 7124141  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 311 - 396
Target Start/End: Original strand, 7124614 - 7124697
Alignment:
Q  311 aatggacttgatacagagcttaacttcttccgggaggcaattcaaacgatcctctagccaacaacaatcaatatctaatagccact 396  Q
    ||||||| |||||  |||||| ||||| ||||| || |||||||||||||||| ||||||||||| |||||||||| |||||||||    
T  7124614 aatggacctgatatggagcttcacttcctccgg-agccaattcaaacgatcctttagccaacaaccatcaatatct-atagccact 7124697  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 7133078 - 7133151
Alignment:
Q  311 aatggacttgatacagagcttaacttcttccgggaggcaattcaaacgatcctctagccaacaacaatcaatat 384  Q
    ||||||| |||| | |||||||||||| ||| | || ||||||||| ||||||||||| |||||| || |||||    
T  7133078 aatggacctgatgccgagcttaacttcctccagaagccaattcaaatgatcctctagctaacaaccatgaatat 7133151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 33390692 - 33390660
Alignment:
Q  139 ttgcatagcagaatttgaacaaatcgttattgt 171  Q
    |||||||||||||||||||||||||| ||||||    
T  33390692 ttgcatagcagaatttgaacaaatcgctattgt 33390660  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 536 - 654
Target Start/End: Original strand, 779449 - 779566
Alignment:
Q  536 gctgttgctgccgagaaggcaaagattgctgcccaggagaaagcaaaggctgctgcggnnnnnnnnnttaaacgatgagaagtccggggttgggatggag 635  Q
    ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||          | ||||||||||||||||||||||||| ||||    
T  779449 gctgttgctgctgagaaggctaagattgcttcccaggagaaagcaaaggctgctgcggggataaaag-tgaacgatgagaagtccggggttgggacggag 779547  T
Q  636 aagaaggatggggaaagtg 654  Q
    |||||||||||||||||||    
T  779548 aagaaggatggggaaagtg 779566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 591
Target Start/End: Complemental strand, 772099 - 772045
Alignment:
Q  537 ctgttgctgccgagaaggcaaagattgctgcccaggagaaagcaaaggctgctgc 591  Q
    |||||||||| |||||||| |||||||||||  ||||||||||||||||||||||    
T  772099 ctgttgctgcggagaaggctaagattgctgctaaggagaaagcaaaggctgctgc 772045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 7210735 - 7210679
Alignment:
Q  102 tattgttaaatagcgcctatagcagcgctatagc-atgttgcatagcagaatttgaa 157  Q
    ||||||||||||||| || |||||||| ||||||  ||||||||||| |||||||||    
T  7210735 tattgttaaatagcggctgtagcagcggtatagcgctgttgcatagcggaatttgaa 7210679  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 41364965 - 41365026
Alignment:
Q  101 atattgttaaatagcgcctatagcagcgctatagca-tgttgcatagcagaatttgaacaaa 161  Q
    ||||||| |||||||| ||||| ||||||||||||| |||||| ||||||||||||||||||    
T  41364965 atattgtgaaatagcgtctataacagcgctatagcactgttgcgtagcagaatttgaacaaa 41365026  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 739316 - 739259
Alignment:
Q  105 tgttaaatagcgcctatagcagcgctatagcatgttgcatagcagaatttgaacaaat 162  Q
    |||||||||||||||||| |||||||||||| | ||||||||  |||||| |||||||    
T  739316 tgttaaatagcgcctataacagcgctatagcctattgcatagttgaatttaaacaaat 739259  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 431028 - 431085
Alignment:
Q  101 atattgttaaatagcgcctatagcagcgctatagca-tgttgcatagcagaatttgaa 157  Q
    |||||||||||||||| ||||||  ||||||||||| |||||| ||||||||||||||    
T  431028 atattgttaaatagcggctatagatgcgctatagcactgttgcgtagcagaatttgaa 431085  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 42273449 - 42273387
Alignment:
Q  18 ttcaatcaaacttaaatcattttttgaaaacacttcgtagcttgcttaatttagaaaagaaaaa 81  Q
    |||||||| |||| | |||||||| |||| || || ||||||||||||||||||||||||||||    
T  42273449 ttcaatcacacttcattcatttttagaaa-cattttgtagcttgcttaatttagaaaagaaaaa 42273387  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 29749271 - 29749329
Alignment:
Q  104 ttgttaaatagcgcctatagcagcgctatagca-tgttgcatagcagaatttgaacaaa 161  Q
    ||||||||||||   |||||||||||||||||| ||| |||||||| ||||||||||||    
T  29749271 ttgttaaatagcagttatagcagcgctatagcactgtagcatagcaaaatttgaacaaa 29749329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 32616868 - 32616835
Alignment:
Q  104 ttgttaaatagcgcctatagcagcgctatagcat 137  Q
    ||||||||||||| ||||||||||||||||||||    
T  32616868 ttgttaaatagcggctatagcagcgctatagcat 32616835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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