View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1288_high_36 (Length: 252)

Name: NF1288_high_36
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1288_high_36
NF1288_high_36
[»] chr8 (2 HSPs)
chr8 (11-252)||(42991284-42991523)
chr8 (52-245)||(35017979-35018172)
[»] chr3 (2 HSPs)
chr3 (11-245)||(38213980-38214214)
chr3 (11-245)||(38218199-38218433)
[»] chr4 (6 HSPs)
chr4 (108-176)||(53495383-53495451)
chr4 (90-176)||(53488672-53488758)
chr4 (82-184)||(53492989-53493091)
chr4 (82-179)||(53499286-53499383)
chr4 (109-179)||(53502408-53502478)
chr4 (76-188)||(52591022-52591134)
[»] chr6 (2 HSPs)
chr6 (79-170)||(10411374-10411465)
chr6 (79-140)||(10379765-10379826)
[»] chr7 (4 HSPs)
chr7 (68-189)||(37188910-37189031)
chr7 (76-140)||(32715057-32715121)
chr7 (76-140)||(32709835-32709899)
chr7 (76-140)||(32718435-32718499)
[»] chr2 (2 HSPs)
chr2 (76-184)||(16942648-16942756)
chr2 (76-184)||(17013313-17013421)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 42991523 - 42991284
Alignment:
Q  11 cagagaaggaagtggaagagacagaggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaacc 110  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42991523 cagagaaggaagtggaagagacag--gataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaacc 42991426  T
Q  111 acctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaag 210  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  42991425 acctcttgtagcccaatcttcagcgttccaaagacttgaatatattctcatcggttggttctttgggaaaggaatactaatagattcagcattcttgaag 42991326  T
Q  211 atccttattgggatgttgtcaaccaagaatctgcatttatat 252  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  42991325 atccttattgggatgttgtcaaccaagaatctgcagttatat 42991284  T

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Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 52 - 245
Target Start/End: Complemental strand, 35018172 - 35017979
Alignment:
Q  52 ttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaat 151  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || ||||    
T  35018172 ttgaaattacggtagtatgctgtaaagggtgctttggaccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattccacaggctggaat 35018073  T
Q  152 atattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattgggatgttgtcaaccaagaatctgca 245  Q
    | ||||||||||||||||||||||| ||||||| |||||| |||||| |||||||||| | ||||||||| ||||| |||||||||||||||||    
T  35018072 agattctcattggttggttctttggaaaaggaacaccaatagattcaacattcttgaatacccttattggcatgttatcaaccaagaatctgca 35017979  T

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Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 38213980 - 38214214
Alignment:
Q  11 cagagaaggaagtggaagagacagaggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaacc 110  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38213980 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 38214079  T
Q  111 acctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaag 210  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  38214080 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 38214179  T
Q  211 atccttattgggatgttgtcaaccaagaatctgca 245  Q
    |||||||||||| ||||||||||||| ||||||||    
T  38214180 atccttattggggtgttgtcaaccaaaaatctgca 38214214  T

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Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 38218199 - 38218433
Alignment:
Q  11 cagagaaggaagtggaagagacagaggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaacc 110  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38218199 cagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaacc 38218298  T
Q  111 acctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaag 210  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  38218299 acctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaag 38218398  T
Q  211 atccttattgggatgttgtcaaccaagaatctgca 245  Q
    |||||||||||| ||||||||||||| ||||||||    
T  38218399 atccttattggggtgttgtcaaccaaaaatctgca 38218433  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 53495451 - 53495383
Alignment:
Q  108 accacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgg 176  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||    
T  53495451 accacctcttgttgcccaatcatcagcattccatagacttgaatatatcctcattggttgattctttgg 53495383  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 53488672 - 53488758
Alignment:
Q  90 ccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgg 176  Q
    |||||| |||||||| | |||||||||||| ||||||||||| || ||||| ||||||||||||| ||||||||| || ||||||||    
T  53488672 ccaatctgttttcacaagaccacctcttgttgcccaatcatcggcattccatagacttgaatataatctcattggctgcttctttgg 53488758  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 53493091 - 53492989
Alignment:
Q  82 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaag 181  Q
    |||||||||||||| || || || |  || |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| || ||||| |    
T  53493091 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatg 53492992  T
Q  182 gaa 184  Q
    |||    
T  53492991 gaa 53492989  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 53499383 - 53499286
Alignment:
Q  82 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaa 179  Q
    |||||||||||||| || || || |  || |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| || |||||    
T  53499383 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaa 53499286  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 53502478 - 53502408
Alignment:
Q  109 ccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaa 179  Q
    ||||||||||| ||||| | ||| || ||||| | ||||||||||||||||||||||||||||||||||||    
T  53502478 ccacctcttgttgcccagttatctgcattccacaaacttgaatatattctcattggttggttctttgggaa 53502408  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 52591134 - 52591022
Alignment:
Q  76 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttg 175  Q
    ||||| |||| |||||||||||||||| | | ||| || ||||| ||||||| ||| || | ||| |||||||||||||| ||||||| |||| | || |    
T  52591134 aatggggcttgggaccaatcagttttcgctagacctccccttgtggcccaattatctgcatcccaaagacttgaatatatactcattgcttggcttttag 52591035  T
Q  176 ggaaaggaatacc 188  Q
    | |||||||||||    
T  52591034 gaaaaggaatacc 52591022  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 10411465 - 10411374
Alignment:
Q  79 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggtt 170  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| ||||| |  ||   ||||||| |||||||||||||    
T  10411465 ggtgctttggaccaatctgttttctccaaaccaccccttgtagcccaatcatcagcattccataagctattatatattttcattggttggtt 10411374  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 10379765 - 10379826
Alignment:
Q  79 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 140  Q
    ||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||| |||||    
T  10379765 ggtgctttggaccaatctgttttctctaaaccaccccttgtggcccaatcatcagcattcca 10379826  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 37189031 - 37188910
Alignment:
Q  68 aagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttg 167  Q
    |||| ||||| || || ||||||||||| || || || |  |||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  37189031 aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagcattccaaagactagaatagattctcattggttg 37188932  T
Q  168 gttctttgggaaaggaatacca 189  Q
    | | || ||||| |||| ||||    
T  37188931 gcttttggggaatggaacacca 37188910  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 32715121 - 32715057
Alignment:
Q  76 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 140  Q
    ||||||||||| |||||||| |||||| |||||||||||||||| ||||||||||| || |||||    
T  32715121 aatggtgcttttgaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattcca 32715057  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 32709899 - 32709835
Alignment:
Q  76 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 140  Q
    |||||||||||||||||||| |||||| | || ||||||||||| ||||||||||| || |||||    
T  32709899 aatggtgctttggaccaatctgttttctctaatccacctcttgttgcccaatcatctgcattcca 32709835  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 32718499 - 32718435
Alignment:
Q  76 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 140  Q
    ||||||||||| ||||||||||||||  | || ||||| ||||| ||||||||||| || |||||    
T  32718499 aatggtgcttttgaccaatcagttttttctaatccaccccttgtggcccaatcatctgcattcca 32718435  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 16942756 - 16942648
Alignment:
Q  76 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttg 175  Q
    ||||| || |||| |||||| |||||||| |  |||||||| || ||||||| ||| || ||||| |||||||||||||| ||||| | |||||||||||    
T  16942756 aatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttg 16942657  T
Q  176 ggaaaggaa 184  Q
    | |||||||    
T  16942656 gaaaaggaa 16942648  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 17013421 - 17013313
Alignment:
Q  76 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttg 175  Q
    ||||| || |||| |||||| |||||||| |  |||||||| || ||||||| ||| || ||||| |||||||||||||| ||||| | |||||||||||    
T  17013421 aatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttg 17013322  T
Q  176 ggaaaggaa 184  Q
    | |||||||    
T  17013321 gaaaaggaa 17013313  T

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