View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1288_high_39 (Length: 251)

Name: NF1288_high_39
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1288_high_39
NF1288_high_39
[»] chr8 (2 HSPs)
chr8 (13-108)||(13774297-13774392)
chr8 (187-251)||(13774422-13774486)
[»] chr1 (1 HSPs)
chr1 (54-134)||(39457437-39457517)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 13774297 - 13774392
Alignment:
Q  13 aatattctagatatagataacagaattatatacatttctcactttcactttaatccttgtgatacatcatatattttattagtacaaaacatttat 108  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| ||| ||||||||||||||||||    
T  13774297 aatattctagatatacataacagaattatatacatttctcactttcactttaattcttatgacacatcatatactttgttagtacaaaacatttat 13774392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 13774422 - 13774486
Alignment:
Q  187 taacatcgaagcataaattcaaaatctaacctaaaagtcacaatttaattagaatacatctatca 251  Q
    ||||||| ||| ||||||| |||||||||||||||| |||||||||  |||||||||||||||||    
T  13774422 taacatcaaagtataaattaaaaatctaacctaaaaatcacaatttccttagaatacatctatca 13774486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 39457437 - 39457517
Alignment:
Q  54 ctttcactttaatccttgtgatacatcatatattttattagtacaaaacatttatcacctcattaattaacataagttttt 134  Q
    ||||||||||| ||||||||| |||||||  || || | || ||||||||||||||||||||||| ||||||  |||||||    
T  39457437 ctttcactttagtccttgtgacacatcatgcatcttgtcagcacaaaacatttatcacctcattagttaacaggagttttt 39457517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University