View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_high_42 (Length: 223)
Name: NF1288_high_42
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 5501542 - 5501338
Alignment:
| Q |
1 |
agaggcttcatccatgatgaaatataggtccaacattcgttatggaaaaattattattcgggatttccaaaagcttcagacaaagaaagatgtcaaacat |
100 |
Q |
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| T |
5501542 |
agaggcttcatccatgatgaaatataggtccaacattcgttatggaaaaattattattcgggatttccaaaagcttcagacaaagaaagatgtcaagcat |
5501443 |
T |
|
| Q |
101 |
tgtagggtttggacaaatgttgcgggacagattccatggattgagtgtctaaagagcatggagaaacccataatatgtgattttcttaagggtggatgtt |
200 |
Q |
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| T |
5501442 |
tgtagggtttggacaaatggtgcgggacagattccatggattgagtgtgtaaagagcatggagaaacccataatatgtgattttcttaagggtggatgtt |
5501343 |
T |
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| Q |
201 |
aacat |
205 |
Q |
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||||| |
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| T |
5501342 |
aacat |
5501338 |
T |
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