View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_high_8 (Length: 546)
Name: NF1288_high_8
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 11 - 520
Target Start/End: Complemental strand, 29839945 - 29839436
Alignment:
| Q |
11 |
cagagagagtagtactatgtaggaagacataataaccaagtataacgacgcaaataactgagaggaaaagcgtataccttagcttcaacatatttccatt |
110 |
Q |
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| T |
29839945 |
cagagagagtagtactatgctggaagacataataaccaagtataacgacataaataactgagaggaaaagcgtataccttagcttcaacatatttccatt |
29839846 |
T |
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| Q |
111 |
tcacaagaaggtgatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctgtaaaacagaacaatgtaagtaatcaaatca |
210 |
Q |
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| T |
29839845 |
tcacaagaaggtgatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctgtaaaacagaacaatgtaagtaatcaaatca |
29839746 |
T |
|
| Q |
211 |
attttttctgaacaaatgcacacaagttaaagacataaaaagagcttattgaataaaaacaaacatatctaaggacaaaataaatgttatgacacaatgc |
310 |
Q |
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| T |
29839745 |
attttttctgaacaaatgcacacatgttaaagacataaaaagagcttattgaataaaaacaaacatatctaaggacaaaataaatgttatgacacaatgc |
29839646 |
T |
|
| Q |
311 |
agacctaaaaggaaacaagtcgaacatcccataagaaattttcgacataaggnnnnnnnncagtcaagtacggatctcatatcataagaaacaagttatc |
410 |
Q |
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| T |
29839645 |
agacctaaaaggaaacaagtcgaacatcccataagaaattttcgacataagcaaaaaaaacagttaagtacggatctcatatcataagaaacaagttatc |
29839546 |
T |
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| Q |
411 |
atacctgttgccaacatttcagcatctcacatgcaagtctacgcttcactgcaagagttgctttagcactatcaatcgccattccaatttgtatatctac |
510 |
Q |
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| T |
29839545 |
atacctgttgccaacatttcagcatctcacatgcaagtctacgcttcactgcaagagttgctttagcactatcaatcgccattccaatttgtatatctac |
29839446 |
T |
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| Q |
511 |
accctgaagg |
520 |
Q |
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| T |
29839445 |
accctgaagg |
29839436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 412 - 515
Target Start/End: Original strand, 34625923 - 34626026
Alignment:
| Q |
412 |
tacctgttgccaacatttcagcatctcacatgcaagtctacgcttcactgcaagagttgctttagcactatcaatcgccattccaatttgtatatctaca |
511 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||| || ||||| || || | |||||||| |||||||||| ||| ||||||||| |
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| T |
34625923 |
tacctgttgccaatatttcaccatctcacatgcaagtctacgcttcaccgcgagagtggccttggtgctatcaattgccattccaagttggatatctaca |
34626022 |
T |
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| Q |
512 |
ccct |
515 |
Q |
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|||| |
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| T |
34626023 |
ccct |
34626026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 34625322 - 34625379
Alignment:
| Q |
123 |
gatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctg |
180 |
Q |
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|||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||| |
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| T |
34625322 |
gatgtttttcaccccaaccattcgctaacggaagattcataatgttatcttgtgcctg |
34625379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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