View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1288_low_1 (Length: 802)

Name: NF1288_low_1
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1288_low_1
NF1288_low_1
[»] chr2 (4 HSPs)
chr2 (14-773)||(8020575-8021329)
chr2 (74-151)||(22965011-22965088)
chr2 (74-151)||(22399511-22399588)
chr2 (377-457)||(22791940-22792020)
[»] chr3 (48 HSPs)
chr3 (231-773)||(28151610-28152149)
chr3 (292-591)||(17744314-17744615)
chr3 (292-591)||(19045634-19045935)
chr3 (245-567)||(28037413-28037737)
chr3 (14-151)||(28150892-28151026)
chr3 (291-586)||(8539081-8539381)
chr3 (246-514)||(11420963-11421232)
chr3 (14-146)||(28003141-28003270)
chr3 (273-515)||(27458741-27458981)
chr3 (274-457)||(28149970-28150155)
chr3 (443-773)||(11421393-11421721)
chr3 (14-101)||(27979451-27979538)
chr3 (150-238)||(28151276-28151364)
chr3 (320-457)||(28161925-28162064)
chr3 (320-477)||(28185968-28186127)
chr3 (291-416)||(27954347-27954471)
chr3 (291-460)||(27920262-27920435)
chr3 (527-773)||(27920463-27920704)
chr3 (659-773)||(30993721-30993835)
chr3 (659-773)||(8538746-8538860)
chr3 (14-100)||(27919331-27919414)
chr3 (659-773)||(27954559-27954673)
chr3 (274-383)||(27776525-27776634)
chr3 (14-143)||(27459906-27460032)
chr3 (339-477)||(28479797-28479937)
chr3 (339-477)||(28508980-28509120)
chr3 (523-591)||(27430802-27430870)
chr3 (671-773)||(27430613-27430715)
chr3 (15-132)||(11419961-11420075)
chr3 (14-69)||(17745559-17745614)
chr3 (14-69)||(19046879-19046934)
chr3 (659-773)||(28037895-28038009)
chr3 (446-542)||(26139089-26139185)
chr3 (657-773)||(28479486-28479602)
chr3 (443-542)||(28162792-28162891)
chr3 (441-542)||(26110202-26110303)
chr3 (441-546)||(26127278-26127383)
chr3 (274-339)||(28056547-28056612)
chr3 (274-339)||(28066972-28067037)
chr3 (524-568)||(18076983-18077027)
chr3 (69-141)||(26236438-26236510)
chr3 (14-70)||(28036396-28036452)
chr3 (657-773)||(28508669-28508785)
chr3 (153-204)||(28054960-28055011)
chr3 (153-204)||(28065385-28065436)
chr3 (659-773)||(28163032-28163146)
chr3 (659-732)||(18078903-18078976)
chr3 (441-546)||(26177328-26177433)
[»] scaffold0922 (1 HSPs)
scaffold0922 (350-773)||(1819-2238)
[»] scaffold0257 (2 HSPs)
scaffold0257 (273-469)||(19079-19277)
scaffold0257 (158-204)||(18626-18672)
[»] scaffold1142 (1 HSPs)
scaffold1142 (441-532)||(530-621)


Alignment Details
Target: chr2 (Bit Score: 696; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 14 - 773
Target Start/End: Original strand, 8020575 - 8021329
Alignment:
Q  14 agacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaattcaaaagtaatttgaaggccatgtga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020575 agacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaattcaaaagtaatttgaaggccatgtga 8020674  T
Q  114 aaatcacttggatattcctctccaaatatatacatatttcttgtattcttttttacactttgtcaataccggaattgaattataccacaatattgacagg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8020675 aaatcacttggatattcctctccaaatatatacatatttcttgtattcttttttacactttgtcagtaccggaattgaattataccacaatattgacagg 8020774  T
Q  214 ttagcgaaataagtgttgaagaaggtgacaaccaaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttga 313  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020775 ttagcgaaataagtgttgaagaaggtgacaaccaaagagctatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttga 8020874  T
Q  314 aatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaa 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8020875 aatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttatctcatcgcccttttcattttgaa 8020974  T
Q  414 gttaaccttcttctttctcaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatg 513  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020975 gttaaccttcttctttcccaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatg 8021074  T
Q  514 aaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnnaaattaattt 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  8021075 aaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcatttttttaaaattaattt 8021174  T
Q  614 tctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaa 713  Q
    ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021175 tctagtgctcaaatatgcataaacattatttcatgtac-----tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaa 8021269  T
Q  714 gggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttga 773  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8021270 gggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctctgttga 8021329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 22965011 - 22965088
Alignment:
Q  74 tattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 151  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||| |||||| ||||||||||||||||||||||| ||||    
T  22965011 tattaccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttcgatattcctctccaaatatatacttatt 22965088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 22399511 - 22399588
Alignment:
Q  74 tattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 151  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||| ||||||  |||||||||||||||||||||| ||||    
T  22399511 tattaccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttctatattcctctccaaatatatacttatt 22399588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 22791940 - 22792020
Alignment:
Q  377 ttttcttaagttacctcatcgcccttttcattttgaagttaacct-tcttctttctcaccttttctcagtttctctaaatga 457  Q
    |||||||| ||||||||||  ||||||| ||||||||||||| || |||||| ||||  || || |||||||||||||||||    
T  22791940 ttttcttatgttacctcataacccttttgattttgaagttaaactctcttctctctccactatt-tcagtttctctaaatga 22792020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 257; Significance: 1e-142; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 231 - 773
Target Start/End: Original strand, 28151610 - 28152149
Alignment:
Q  231 gaagaaggtgacaaccaaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaacta 330  Q
    ||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28151610 gaagaaggtgacaaccaaagagcaatagcttatactccaattgacataacaaagcctgtaaccactcaagatgttgatgttgaaatctggcaggaaacta 28151709  T
Q  331 gtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagttaacct-tcttcttt 429  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| | || |||| |||    
T  28151710 gtaacactaatgatgatcaaggtgaagaatctttggatcgcttttattttcttaagttacctcatcgccctttttattttgaagtttagctctcttgttt 28151809  T
Q  430 ctcaccttttctcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaa 529  Q
    | || ||||| ||||||||||||||||||||  |||||||||||| ||| ||||||| |||| | |||||| | ||||| ||| | ||||||||||||||    
T  28151810 cccatcttttgtcagtttctctaaatgatgataatgtcatgaaagcaagctcaaatactgaggatcagttttcaaaggatgataacatattagtttccaa 28151909  T
Q  530 atcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgc-atcannnnnnnnaaattaattttctagtgctcaaata 628  Q
    |||||||||||||||||||| |||||||| |||||||||| || || ||||||||||||| |  |           ||||||||| || ||||| |||||    
T  28151910 atcaagaccctcttctattgcatctcagtttccttcaaagccttctgaaggtattttatttctttgttttatttttaattaatttacttgtgcttaaata 28152009  T
Q  629 tgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatc 728  Q
    |||||||  ||| |||| | |||     | |||||||| |||||||||| |||||||||||||||||||||||   |||||||  |||||||||||||||    
T  28152010 tgcataattattctttcctatac-----tttcaggggacccttctcaaatagatgaagatttaagttcttcttttgttgtcaccggggagcttgagaatc 28152104  T
Q  729 tagtttccaagaatcatttagctattgagaaattgtctttgttga 773  Q
    |||| ||||| |||||||| |||||||||||||||||||||||||    
T  28152105 tagtctccaataatcatttggctattgagaaattgtctttgttga 28152149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 292 - 591
Target Start/End: Complemental strand, 17744615 - 17744314
Alignment:
Q  292 ccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacc 391  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| || | |||| || ||||||||||||| |||| |||||||||||||||    
T  17744615 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttcttaagttacc 17744516  T
Q  392 tcatcgcccttttcattttgaagtt-aaccttcttctttctcaccttttct-cagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattg 489  Q
    ||||||| ||||||||||||||||| |||  |||||||||||||| ||| | ||||||||||||||||||| |||||  |||||||||| ||||||||||    
T  17744515 tcatcgctcttttcattttgaagttgaactctcttctttctcaccctttgtccagtttctctaaatgatgatgatgttgtgaaagtaagctcaaatattg 17744416  T
Q  490 agcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttatt 589  Q
    || | || ||||| ||  | ||||||||||||||||||||||||| ||| |||| ||||| ||| |||| |||||||||| |||||  ||||||||||||    
T  17744415 aggatcaatttcctaaaaatgatgaaatattagtttccaaatcaataccatcttgtattgcatcccagtatccttcaaagcctactggaggtattttatt 17744316  T
Q  590 gc 591  Q
    ||    
T  17744315 gc 17744314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 292 - 591
Target Start/End: Complemental strand, 19045935 - 19045634
Alignment:
Q  292 ccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacc 391  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| || | |||| || ||||||||||||| |||| |||||||||||||||    
T  19045935 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttcttaagttacc 19045836  T
Q  392 tcatcgcccttttcattttgaagtt-aaccttcttctttctcaccttttct-cagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattg 489  Q
    ||||||| ||||||||||||||||| |||  |||||||||||||| ||| | ||||||||||||||||||| |||||  |||||||||| ||||||||||    
T  19045835 tcatcgctcttttcattttgaagttgaactctcttctttctcaccctttgtccagtttctctaaatgatgatgatgttgtgaaagtaagctcaaatattg 19045736  T
Q  490 agcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttatt 589  Q
    || | || ||||| ||  | ||||||||||||||||||||||||| ||| |||| ||||| ||| |||| |||||||||| |||||  ||||||||||||    
T  19045735 aggatcaatttcctaaaaatgatgaaatattagtttccaaatcaataccatcttgtattgcatcccagtatccttcaaagcctactggaggtattttatt 19045636  T
Q  590 gc 591  Q
    ||    
T  19045635 gc 19045634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 245 - 567
Target Start/End: Original strand, 28037413 - 28037737
Alignment:
Q  245 ccaaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgac 344  Q
    ||||||||| ||||||||| |||||||  |||||||||||||| | |||||| ||||||||||| |  ||| |||||  ||||||||||||||||||||     
T  28037413 ccaaagagccatagcttctccttcaattaccataacaaagcctgttaccactgaagatgttgatctcaaaaactggcgcgaaactagtaacactaatgat 28037512  T
Q  345 gatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaag-ttaaccttcttctttctcacctt-ttctc 442  Q
    | || |||| |||| |||||||||| || || |||||| ||||||||||||| ||||||||||||||||| |||||   |||||||  |||||| |  ||    
T  28037513 ggtcaaggtaaagactctttggatcagtgttattttctaaagttacctcatcacccttttcattttgaagtttaactcgcttcttttccaccttctgttc 28037612  T
Q  443 agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 542  Q
    ||||| || |||||||||  |||||||||||||||| |||||||||||| | |||||| | ||||| ||||| || ||||||||||||||||||||||||    
T  28037613 agtttatccaaatgatgataatgtcatgaaagtaagttcaaatattgaggatcagttttctaaggatgatgacatgttagtttccaaatcaagaccctct 28037712  T
Q  543 tctattgaatctcagtgtccttcaa 567  Q
    ||||||| |||||| | ||||||||    
T  28037713 tctattgcatctcattttccttcaa 28037737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 28150892 - 28151026
Alignment:
Q  14 agacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaattcaaaagtaatttgaaggccatgtga 113  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||    
T  28150892 agacaaagcatgaatttgttgaaaatgttcctcaacaagagatgccatcagtagcaataata---ccaacaaattcaaaagtaatttgaaggccatgtga 28150988  T
Q  114 aaatcacttggatattcctctccaaatatatacatatt 151  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28150989 aaatcacttggatattcctctccaaatatatacatatt 28151026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 291 - 586
Target Start/End: Complemental strand, 8539381 - 8539081
Alignment:
Q  291 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttac 390  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||||||    ||| |||||||||||| ||||||| ||||| ||||||||||||||    
T  8539381 accactcaagatgttgatgttaaactttggcaggaaactagtaacactaatattaatcaaggtgaagaatccttggatcagttttattttcttaagttac 8539282  T
Q  391 ctcatcgcccttttcatttt---gaagttaacct-tcttctttctcaccttttct-cagtttctctaaatgatgacgatgtcatgaaagtaagatcaaat 485  Q
    ||  || |||||||||||||   |||||| | || ||||||||| |||| ||| | ||| || |||||||||||| | || |||||||||||| ||||||    
T  8539281 cttgtcacccttttcattttcatgaagttgaactctcttctttcccaccctttgttcagcttttctaaatgatgatgttgccatgaaagtaagctcaaat 8539182  T
Q  486 attgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattt 585  Q
    ||| || |  ||||||| ||||| || ||||||||||||||||||||||||| ||||| ||||  |||||||| |||||||||| || || |||||||||    
T  8539181 attcagaatgagtttcctaaggatgaagaaatattagtttccaaatcaagactctcttgtattccatctcagtctccttcaaagccttctgaaggtattt 8539082  T
Q  586 t 586  Q
    |    
T  8539081 t 8539081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 246 - 514
Target Start/End: Original strand, 11420963 - 11421232
Alignment:
Q  246 caaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacg 345  Q
    |||| ||| ||||||||| ||  ||| |||||||||||||||   |||| |||||||||||||||| ||||||| ||||||||||||||  ||||||| |    
T  11420963 caaatagccatagcttctcctcaaattgccataacaaagcctgctaccattcaagatgttgatgttaaaatctgtcaggaaactagtaaggctaatgatg 11421062  T
Q  346 atcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt-aaccttcttctttctcaccttttctcag 444  Q
    ||| |||||| || |||||||||| ||||| ||||||||||||||  |||| |||||||||||| |||||| |||  ||||||||| |||  ||| ||||    
T  11421063 atcaaggtgatgactctttggatcagttttattttcttaagttacgacatcacccttttcatttagaagttgaactctcttctttcccactgtttgtcag 11421162  T
Q  445 tttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatga 514  Q
    || ||||||||||||| | ||||||||||| |||  |||||||||||||||| || || ||||| |||||    
T  11421163 ttgctctaaatgatgatgctgtcatgaaagcaagcacaaatattgagcaacatttacctaaggatgatga 11421232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 28003141 - 28003270
Alignment:
Q  14 agacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaattcaaaagtaatttgaaggccatgtga 113  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| || |   |||||||||||||||||||||||||||||||||||    
T  28003141 agacagagcatgaatttgttgaaaatgtccctcatcaagagatgccatcagtagcaataaaa---ccaacaaattcaaaagtaatttgaaggccatgtga 28003237  T
Q  114 aaatcacttggatattcctctccaaatatatac 146  Q
    |||||||||||||| |||||||| |||||||||    
T  28003238 aaatcacttggataatcctctcccaatatatac 28003270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 273 - 515
Target Start/End: Complemental strand, 27458981 - 27458741
Alignment:
Q  273 gccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggt 372  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || ||||| || |||| ||||||||| ||||||||||  |    
T  27458981 gccataacaaagcctcttaccactcaagatgttgatgttaaaatctggcaggaaactagcaagactaaggatgatcaaggtgaagactctttggatcaat 27458882  T
Q  373 tttcttttcttaagttacctcatcgcccttttcattttgaag-ttaaccttcttctttctcacctttt-ctcagtttctctaaatgatgacgatgtcatg 470  Q
     |  | ||    ||||| || ||| ||||||||||||||||| |||||| ||||||||   || ||||  |||||||||||||||||||| | ||||||     
T  27458881 ctgatatt----agttatcttatcacccttttcattttgaagtttaaccctcttctttgcaactttttgttcagtttctctaaatgatgatgctgtcata 27458786  T
Q  471 aaagtaagatcaaatattgagcaacagtttcccaaggaagatgaa 515  Q
    |||||||| |||||||||||| | |||||||| || || ||||||    
T  27458785 aaagtaagctcaaatattgagaatcagtttcctaacgatgatgaa 27458741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 274 - 457
Target Start/End: Original strand, 28149970 - 28150155
Alignment:
Q  274 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggtt 373  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || |||||||||||||||||||||||| |||| ||||||||| |||| |||||  ||    
T  28149970 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacactaatgatgatcaaggtgaagagtcttaggatcaatt 28150069  T
Q  374 ttcttttcttaagttacctcatcgcccttttcattttgaag-ttaaccttcttctttctcacctttt-ctcagtttctctaaatga 457  Q
    || ||||||||||||| |||||| ||||||||||||||||| ||||   |||||| || ||||||||  |||||||||||||||||    
T  28150070 ttattttcttaagttatctcatcacccttttcattttgaagtttaaatctcttctctcacaccttttgttcagtttctctaaatga 28150155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 443 - 773
Target Start/End: Original strand, 11421393 - 11421721
Alignment:
Q  443 agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 542  Q
    |||||||| ||||||||| | | ||| ||||||||||||||||| |||| |||||||||| | ||| ||||| |||||||||||||||||||||||||||    
T  11421393 agtttctcgaaatgatgatgctttcaagaaagtaagatcaaatactgaggaacagtttcctacggatgatgatatattagtttccaaatcaagaccctct 11421492  T
Q  543 tctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatca------nnnnnnnnaaattaattttctagtgctcaaatatgcataaa 636  Q
    | ||||| |||||||| ||||| |||  ||  | ||||||||||||||| |||              || || ||||| | ||||  ||||||||||||     
T  11421493 tatattgcatctcagtatcctttaaaacctgttgaaggtattttattgcttcagtttatttttaattaattttattttattgtgcataaatatgcataat 11421592  T
Q  637 cattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaag---ggagcttgagaatctagtt 733  Q
     |||||||| | |||     | |||||||| |||||||||| || |||||||||      ||||||  ||||||||||   |||||||||||||||||||    
T  11421593 tattatttcctatac-----tttcaggggacccttctcaaatagttgaagattt------ttcttgggttgtcacaagggaggagcttgagaatctagtt 11421681  T
Q  734 tccaagaatcatttagctattgagaaattgtctttgttga 773  Q
    |||||||| ||||| ||||||||||| |||||||||||||    
T  11421682 tccaagaaccatttggctattgagaacttgtctttgttga 11421721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 27979451 - 27979538
Alignment:
Q  14 agacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaattcaaaagtaatttg 101  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  27979451 agacagagcatgaatttgttgaaaatgttcctcaacaagacatgccatcagtagcaacaatattaccaacaaattcgaaagtaatttg 27979538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 28151276 - 28151364
Alignment:
Q  150 tttcttgtattcttttttacactttgtcaataccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaagg 238  Q
    ||||||||||||||||| ||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28151276 tttcttgtattctttttcacactttgtcagtacagaaattgaattatactacaatattgacaggttagcgaaataagtgttgaagaagg 28151364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 320 - 457
Target Start/End: Original strand, 28161925 - 28162064
Alignment:
Q  320 gcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaag-ttaa 418  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||||  |||| ||||||||||||| |||||| ||||||||||||||||| ||||    
T  28161925 gcaggaaactagtaacactaatgatgatcaaggtgaagactctttggatcaattttattttcttaagttatctcatcacccttttcattttgaagtttaa 28162024  T
Q  419 ccttcttctttctcacctttt-ctcagtttctctaaatga 457  Q
       |||||| || ||||||||  |||||||||||||||||    
T  28162025 atctcttctctcacaccttttgttcagtttctctaaatga 28162064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 320 - 477
Target Start/End: Original strand, 28185968 - 28186127
Alignment:
Q  320 gcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaag-ttaa 418  Q
    ||||||||||||||||||| |||| |||| ||||||||| ||||||||||  |||| ||||||||||||| |||||| ||||||||||||||||| ||||    
T  28185968 gcaggaaactagtaacactgatgatgatcaaggtgaagactctttggatcaattttattttcttaagttatctcatcacccttttcattttgaagtttaa 28186067  T
Q  419 ccttcttctttctcacctttt-ctcagtttctctaaatgatgacgatgtcatgaaagtaa 477  Q
       |||||| || ||||||||  |||||||||||||||||||| | ||| || |||||||    
T  28186068 atctcttctctcacaccttttgttcagtttctctaaatgatgatgctgttataaaagtaa 28186127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 291 - 416
Target Start/End: Original strand, 27954347 - 27954471
Alignment:
Q  291 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttac 390  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||  || || ||||| ||||||||    
T  27954347 accactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggattagtgttgttttcataagttac 27954446  T
Q  391 ctcatcgcccttttcattttgaagtt 416  Q
    ||||||  ||||||||||||||||||    
T  27954447 ctcatc-accttttcattttgaagtt 27954471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 291 - 460
Target Start/End: Original strand, 27920262 - 27920435
Alignment:
Q  291 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaag---t 387  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||  || || ||||| ||||   |    
T  27920262 accactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggattagtgttgttttcataagcaat 27920361  T
Q  388 tacctcatcgcccttttcattttgaag-ttaaccttcttctttctcacctttt-ctcagtttctctaaatgatga 460  Q
    |||||||||  |||||||||||||||| |||||  ||||||||| ||||||||   |||||||||||||||||||    
T  27920362 tacctcatc-accttttcattttgaagtttaactctcttctttcccaccttttggacagtttctctaaatgatga 27920435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 527 - 773
Target Start/End: Original strand, 27920463 - 27920704
Alignment:
Q  527 caaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgcatcannnnnnnna-aattaattttctagtgctcaa 625  Q
    |||||||||| |||||||||||| |||||||| |||||||||| || || ||||||||||||||  |||          ||||| ||||||  |||||||    
T  27920463 caaatcaagaacctcttctattgcatctcagtttccttcaaagccttctgaaggtattttattgtttcattttatttttaattagttttctt-tgctcaa 27920561  T
Q  626 atatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgaga 725  Q
    ||||||||||  ||| |||| | |||| |||     ||||| |||||||||| |||| ||||| ||||||| ||||   |||| |||| |||||||||||    
T  27920562 atatgcataattattctttcctatactttca-----ggggacccttctcaaatagataaagatctaagttcatctttggttgtgacaaaggagcttgaga 27920656  T
Q  726 atctagtttccaagaatcatttagctattgagaaattgtctttgttga 773  Q
    ||||||| |||||||| ||||| ||||||||||| |||||||||||||    
T  27920657 atctagtctccaagaagcatttggctattgagaacttgtctttgttga 27920704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 659 - 773
Target Start/End: Original strand, 30993721 - 30993835
Alignment:
Q  659 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 758  Q
    |||||||| |||||||||| |||||||||||||||||||||||   |||||||| ||||||||||||||||||| ||||||||  ||||||||||||| |    
T  30993721 tcaggggacccttctcaaatagatgaagatttaagttcttctttggttgtcacaggggagcttgagaatctagtctccaagaagtatttagctattgata 30993820  T
Q  759 aattgtctttgttga 773  Q
    | ||||  |||||||    
T  30993821 acttgtacttgttga 30993835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 659 - 773
Target Start/End: Complemental strand, 8538860 - 8538746
Alignment:
Q  659 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 758  Q
    |||||||| |||||||||  |||||||||||||| ||||||||   ||||||||||||||||||| |||||||| |||||||||||||| |||||||| |    
T  8538860 tcaggggacccttctcaattagatgaagatttaatttcttctttggttgtcacaagggagcttgaaaatctagtctccaagaatcatttggctattgata 8538761  T
Q  759 aattgtctttgttga 773  Q
    |  |||| |||||||    
T  8538760 acatgtccttgttga 8538746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 27919331 - 27919414
Alignment:
Q  14 agacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaattcaaaagtaattt 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||   ||||| |||||||||||||| |||||||||    
T  27919331 agacagagcatgaatttgttgaaaatgttcctcaacaaaagatgccatcagtag---caataataccaacaaattcagaagtaattt 27919414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 659 - 773
Target Start/End: Original strand, 27954559 - 27954673
Alignment:
Q  659 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 758  Q
    |||||||| |||||||||| ||||| |||||||||||||| ||   ||||||||||||||||||| ||| || | ||||| || ||||| ||||||||||    
T  27954559 tcaggggacccttctcaaatagatggagatttaagttcttatttggttgtcacaagggagcttgaaaatataatctccaataagcatttggctattgaga 27954658  T
Q  759 aattgtctttgttga 773  Q
    | |||||||||||||    
T  27954659 acttgtctttgttga 27954673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 27776525 - 27776634
Alignment:
Q  274 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggtt 373  Q
    |||||||||||||||  || |||||||||||||||||||||| || ||||||||||||||| ||||||||  ||| ||||||| | ||||||||||  ||    
T  27776525 ccataacaaagcctcctactactcaagatgttgatgttgaaaacttgcaggaaactagtaagactaatgatcatcaaggtgaaaactctttggatcaatt 27776624  T
Q  374 ttcttttctt 383  Q
    || |||||||    
T  27776625 ttattttctt 27776634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 27460032 - 27459906
Alignment:
Q  14 agacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaattcaaaagtaatttgaaggccatgtga 113  Q
    |||||| ||||||||||| ||||| |||||||||| | ||||||||||||||||||||||   |||||||| | ||| ||||||| || |||||||||      
T  27460032 agacagggcatgaatttgatgaaaatgttcctcaaaaggagatgccatcagtagcaacaa---taccaacagactcagaagtaatgtgcaggccatgtcg 27459936  T
Q  114 aaatcacttggatattcctctccaaatata 143  Q
    || || |||| |||||| ||||||||||||    
T  27459935 aagtcccttgcatattcatctccaaatata 27459906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 339 - 477
Target Start/End: Complemental strand, 28479937 - 28479797
Alignment:
Q  339 aatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaag-ttaaccttcttctttctcacctt 437  Q
    ||||| |||| ||||||||| ||||||||||  |||| ||||||||| |||||||||| |||||| |||||||||| ||||   |||||| || ||||||    
T  28479937 aatgatgatcaaggtgaagactctttggatcaattttattttcttaatttacctcatcaccctttgcattttgaagtttaattctcttctctcacacctt 28479838  T
Q  438 tt-ctcagtttctctaaatgatgacgatgtcatgaaagtaa 477  Q
    || |||||||||| ||||||||||   |||||| |||||||    
T  28479837 ttgctcagtttctgtaaatgatgattctgtcataaaagtaa 28479797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 339 - 477
Target Start/End: Complemental strand, 28509120 - 28508980
Alignment:
Q  339 aatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaag-ttaaccttcttctttctcacctt 437  Q
    ||||| |||| ||||||||| ||||||||||  |||| ||||||||| |||||||||| |||||| |||||||||| ||||   |||||| || ||||||    
T  28509120 aatgatgatcaaggtgaagactctttggatcaattttattttcttaatttacctcatcaccctttgcattttgaagtttaattctcttctctcacacctt 28509021  T
Q  438 tt-ctcagtttctctaaatgatgacgatgtcatgaaagtaa 477  Q
    || |||||||||| ||||||||||   |||||| |||||||    
T  28509020 ttgctcagtttctgtaaatgatgattctgtcataaaagtaa 28508980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 27430870 - 27430802
Alignment:
Q  523 tttccaaatcaagaccctcttctattgaatctcagtgtccttcaaagtctactcaaggtattttattgc 591  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||| || || ||| |||||||||||    
T  27430870 tttccaaatcaagaccctcttatattgcatctcagtgtccttcaaagcctgctgaagttattttattgc 27430802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 27430715 - 27430613
Alignment:
Q  671 tctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgt 770  Q
    ||||||| ||||||| |||| ||||| ||||    |||||||| ||| || ||||||||||| |||||||||||||| ||||| ||||| ||||||||||    
T  27430715 tctcaaatagatgaatattttagttcgtctttggctgtcacaaaggaactcgagaatctagtctccaagaatcatttggctatcgagaacttgtctttgt 27430616  T
Q  771 tga 773  Q
    |||    
T  27430615 tga 27430613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 11419961 - 11420075
Alignment:
Q  15 gacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaattcaaaagtaatttgaaggccatgtgaa 114  Q
    ||||||||||| ||||||||||| ||||||||  || ||||| |||||| |||   ||||| |||||||||||||| |||||||||  | |||| || ||    
T  11419961 gacagagcatggatttgttgaaaatgttcctcgtcatgagattccatcaatag---caataataccaacaaattcagaagtaattttcaagccacgtcaa 11420057  T
Q  115 aatcacttggatattcct 132  Q
    |||| |||| ||||||||    
T  11420058 aatctcttgcatattcct 11420075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 17745614 - 17745559
Alignment:
Q  14 agacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagca 69  Q
    |||||||||||||||||||||||| |||||||| || ||| |||||||||||||||    
T  17745614 agacagagcatgaatttgttgaaaatgttcctcgacgagaaatgccatcagtagca 17745559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 19046934 - 19046879
Alignment:
Q  14 agacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagca 69  Q
    |||||||||||||||||||||||| |||||||| || ||| |||||||||||||||    
T  19046934 agacagagcatgaatttgttgaaaatgttcctcgacgagaaatgccatcagtagca 19046879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 659 - 773
Target Start/End: Original strand, 28037895 - 28038009
Alignment:
Q  659 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 758  Q
    |||||||| |||||||||| |||  ||| |||||||| |||||   |||||| |  ||| |||||||||||||| || ||||| ||||| |||||||| |    
T  28037895 tcaggggacccttctcaaatagaaaaagctttaagttattctttggttgtcaaagcggaacttgagaatctagtctctaagaagcatttggctattgata 28037994  T
Q  759 aattgtctttgttga 773  Q
    | |||||||||||||    
T  28037995 atttgtctttgttga 28038009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 542
Target Start/End: Complemental strand, 26139185 - 26139089
Alignment:
Q  446 ttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 542  Q
    |||||||||||||||   | ||| ||||||||| |||||||||||| |||||||||| | ||| ||||| ||| ||||||| ||||| | |||||||    
T  26139185 ttctctaaatgatgattctttcaagaaagtaagctcaaatattgaggaacagtttcctatggatgatgatataatagtttctaaatctaaaccctct 26139089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 657 - 773
Target Start/End: Complemental strand, 28479602 - 28479486
Alignment:
Q  657 tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattga 756  Q
    ||||||| || ||||||||||  |  |||||||||||||||||||   ||||||  || ||||||||| | ||||| |||||||||||||| | |  |||    
T  28479602 tctcaggagacccttctcaaaatgtagaagatttaagttcttctttgcttgtcaagagtgagcttgaggaactagtctccaagaatcatttggattgtga 28479503  T
Q  757 gaaattgtctttgttga 773  Q
    ||| |||||||||||||    
T  28479502 gaacttgtctttgttga 28479486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 443 - 542
Target Start/End: Original strand, 28162792 - 28162891
Alignment:
Q  443 agtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctct 542  Q
    |||||||| ||||||||| | | ||| ||||||||| |||||||||||| |||| ||||| |||   ||||| ||| ||||||||||||| | |||||||    
T  28162792 agtttctcgaaatgatgatgctttcaagaaagtaagctcaaatattgaggaacaatttcctaagattgatgatataatagtttccaaatctaaaccctct 28162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 441 - 542
Target Start/End: Complemental strand, 26110303 - 26110202
Alignment:
Q  441 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 540  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||||||||||| |||| ||| | ||||| ||||| ||| ||||||||||||| | |||||    
T  26110303 tcaggttctctaaatcatgattctttcaagaaagtaagctcaaatattgaggaacaattttctaaggatgatgatataatagtttccaaatctaaaccct 26110204  T
Q  541 ct 542  Q
    ||    
T  26110203 ct 26110202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 441 - 546
Target Start/End: Complemental strand, 26127383 - 26127278
Alignment:
Q  441 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 540  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||||||||||| |||| ||||  ||||| ||| | ||| ||||||||||||| | |||||    
T  26127383 tcaggttctctaaatcatgattctttcaagaaagtaagctcaaatattgaggaacaatttcataaggatgataatataatagtttccaaatctaaaccct 26127284  T
Q  541 cttcta 546  Q
    ||||||    
T  26127283 cttcta 26127278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 28056547 - 28056612
Alignment:
Q  274 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacacta 339  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || ||||||||||||||||||||    
T  28056547 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacacta 28056612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 28066972 - 28067037
Alignment:
Q  274 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacacta 339  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || ||||||||||||||||||||    
T  28066972 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacacta 28067037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 524 - 568
Target Start/End: Complemental strand, 18077027 - 18076983
Alignment:
Q  524 ttccaaatcaagaccctcttctattgaatctcagtgtccttcaaa 568  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||    
T  18077027 ttccaaatcacgaccctcttctattgcatctcagtttccttcaaa 18076983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 26236510 - 26236438
Alignment:
Q  69 aacaatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaata 141  Q
    |||| ||||||||||||||| | |||||||||| || |||||| ||| || | |||| |||||||||||||||    
T  26236510 aacattattaccaacaaattaagaagtaatttgtagaccatgtaaaattcccatggaaattcctctccaaata 26236438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 28036396 - 28036452
Alignment:
Q  14 agacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaa 70  Q
    |||||||||||||||||||||||| | | ||||   |||||||||||||||||||||    
T  28036396 agacagagcatgaatttgttgaaaatttccctcgtgaagagatgccatcagtagcaa 28036452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 657 - 773
Target Start/End: Complemental strand, 28508785 - 28508669
Alignment:
Q  657 tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattga 756  Q
    ||||||| || ||||||||||  |  |||||||||||||||||||   ||||||  || ||||||||| | ||||| ||||||||| |||| | |  |||    
T  28508785 tctcaggagacccttctcaaaatgtagaagatttaagttcttctttgcttgtcaagagtgagcttgagcaactagtctccaagaattatttggattgtga 28508686  T
Q  757 gaaattgtctttgttga 773  Q
    ||| |||||||||||||    
T  28508685 gaacttgtctttgttga 28508669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 28054960 - 28055011
Alignment:
Q  153 cttgtattcttttttacactttgtcaataccggaattgaattataccacaat 204  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||    
T  28054960 cttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28055011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 28065385 - 28065436
Alignment:
Q  153 cttgtattcttttttacactttgtcaataccggaattgaattataccacaat 204  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||    
T  28065385 cttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28065436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 773
Target Start/End: Original strand, 28163032 - 28163146
Alignment:
Q  659 tcaggggaaccttctcaaagagatgaagatttaagttcttctt-gcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgag 757  Q
    |||||||| |||||||||| ||  |||||||| |||||||||| |||| ||||  |||||||||||| | ||||| |||||||| ||||| | |  |||     
T  28163032 tcaggggacccttctcaaaaagtagaagatttcagttcttctttgcat-gtcaagagggagcttgagcaactagtctccaagaagcatttcgattatgat 28163130  T
Q  758 aaattgtctttgttga 773  Q
    || |||||||||||||    
T  28163131 aacttgtctttgttga 28163146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 732
Target Start/End: Complemental strand, 18078976 - 18078903
Alignment:
Q  659 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagt 732  Q
    ||||||||  ||||||| | ||| |||||||||||||||||||   ||||| | |||||||||||||| |||||    
T  18078976 tcaggggactcttctcatatagaagaagatttaagttcttctttgcttgtcgcgagggagcttgagaaactagt 18078903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 546
Target Start/End: Complemental strand, 26177433 - 26177328
Alignment:
Q  441 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccct 540  Q
    |||| |||||||||| ||||   | ||| ||||||||| |||| ||||||| |||| ||||  ||||| ||| | ||| ||||||||||||| | |||||    
T  26177433 tcaggttctctaaatcatgattctttcaagaaagtaagctcaattattgaggaacaatttcataaggatgataatataatagtttccaaatctaaaccct 26177334  T
Q  541 cttcta 546  Q
    ||||||    
T  26177333 cttcta 26177328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 350 - 773
Target Start/End: Original strand, 1819 - 2238
Alignment:
Q  350 aggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagttaaccttcttctttctcaccttttct-cagtttc 448  Q
    ||||||||| | |||  ||||||||| ||||||||||||||| |||| |||||||||||||||||||   || ||| |||| ||| |||| | ||||||     
T  1819 aggtgaagagtatttcaatcggttttattttcttaagttaccacatcacccttttcattttgaagtttgact-cttatttcccacattttgttcagtttt 1917  T
Q  449 tctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatcaagaccctcttctatt 548  Q
    | |||||||||| | | ||||||||||||| ||| |||||||| | || ||||  ||||| |||||||||||||||||||||||||  | || | |||||    
T  1918 tttaaatgatgatgctatcatgaaagtaagctcagatattgaggatcaatttcttaaggatgatgaaatattagtttccaaatcaaagctctgtactatt 2017  T
Q  549 gaatctcagtgtccttcaaagtctactcaaggtattttattgcatca-nnnnnnnnaaattaattttctagtgctcaaatatgcataaacattatttcat 647  Q
    | ||||||||||||||||||| || |||||||||||||||||| |||          |||||||||||| ||||| ||||||||||||  |||||| | |    
T  2018 gtatctcagtgtccttcaaagcctgctcaaggtattttattgcttcattttagttttaattaattttcttgtgctaaaatatgcataattattattacct 2117  T
Q  648 gtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcattt 747  Q
     |||     | ||||| || |||||||||||||||||||||||||||| ||||||  ||||||||| ||||||   ||||||||||||| ||||| ||||    
T  2118 atac-----tttcaggtgacccttctcaaagagatgaagatttaagttattcttgggttgtcacaaaggagctacggaatctagtttccgagaattattt 2212  T
Q  748 agctattgagaaattgtctttgttga 773  Q
     ||||||||||| |||||||||||||    
T  2213 ggctattgagaacttgtctttgttga 2238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 273 - 469
Target Start/End: Original strand, 19079 - 19277
Alignment:
Q  273 gccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggt 372  Q
    ||||||||||||||||| ||||||||||||||||||||| | | || ||||||||||||||||| || ||| |||| ||||||||| ||||||||||  |    
T  19079 gccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaat 19178  T
Q  373 tttcttttcttaagttacctcatcgcccttttcattttg-aagttaaccttcttctttctcacctttt-ctcagtttctctaaatgatgacgatgtcat 469  Q
     || |||||||||||||||||||| |||||||||||||| || |||||  |||||| || ||||||||  ||||||||||||||||| |||| ||||||    
T  19179 attattttcttaagttacctcatcacccttttcattttgaaatttaactctcttctctcacaccttttgttcagtttctctaaatgacgacgttgtcat 19277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 18626 - 18672
Alignment:
Q  158 attcttttttacactttgtcaataccggaattgaattataccacaat 204  Q
    ||||||||| ||||||||||||| | ||||||||||||||| |||||    
T  18626 attctttttgacactttgtcaatgcaggaattgaattatactacaat 18672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 441 - 532
Target Start/End: Original strand, 530 - 621
Alignment:
Q  441 tcagtttctctaaatgatgacgatgtcatgaaagtaagatcaaatattgagcaacagtttcccaaggaagatgaaatattagtttccaaatc 532  Q
    |||||| |||||||||| || | ||||||||||||||| | |||||||||| |||||||||| ||||| ||||||||| || ||||| ||||    
T  530 tcagttcctctaaatgacgatgttgtcatgaaagtaagcttaaatattgaggaacagtttcctaaggatgatgaaataataatttcccaatc 621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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