View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_15 (Length: 464)
Name: NF1288_low_15
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 268 - 453
Target Start/End: Original strand, 28452794 - 28452982
Alignment:
| Q |
268 |
ttggcaaaggagtaaattgaaaggagaagaaatttgtgagtttgtgaaagtacaaatgttgttgtcctccattgtgcaaatcccccatttgtttcttcga |
367 |
Q |
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| T |
28452794 |
ttggcaaaggagtaaattgaaaggagaagaaatttgtgagtttgtgaaagtacaaatgttgttgtcctccattgtgcaaatcccccatttgtttcttcga |
28452893 |
T |
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| Q |
368 |
cattcttcaacaacaccactccgaatccgatcaatctg---ctcctcctccttcatcaaggtcagtatcaaattgttctcactttctct |
453 |
Q |
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| T |
28452894 |
cattcttcaacaacaccactccgaatccgatcaatctgctcctcctcctccttcatcaaggtcagtatcaaattgttctcactttctct |
28452982 |
T |
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