View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_17 (Length: 455)
Name: NF1288_low_17
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 181 - 431
Target Start/End: Complemental strand, 5501588 - 5501338
Alignment:
| Q |
181 |
ggacaaccaactatttctcaaagacgttaccgtagataagttacacagaggcttcatccatgatgaaatataggtccaacattcgttatggaaaaattat |
280 |
Q |
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| T |
5501588 |
ggacaaccaactatttctcaaagacgttaccgtagataagttacatagaggcttcatccatgatgaaatataggtccaacattcgttatggaaaaattat |
5501489 |
T |
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| Q |
281 |
tattcgggatttccaaaagcttcagacaaagaaagatgtcaaacattgtagggtttggacaaatgttgcgggacagattccatggattgagtgtctaaag |
380 |
Q |
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| T |
5501488 |
tattcgggatttccaaaagcttcagacaaagaaagatgtcaagcattgtagggtttggacaaatggtgcgggacagattccatggattgagtgtgtaaag |
5501389 |
T |
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| Q |
381 |
agcatggagaaacccataatatgtgattttcttaagggtggatgttaacat |
431 |
Q |
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| T |
5501388 |
agcatggagaaacccataatatgtgattttcttaagggtggatgttaacat |
5501338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 5501747 - 5501680
Alignment:
| Q |
21 |
ttataattaccactctatagcattaatctctgcggtaattgctccatcttagacaactcatctcgatg |
88 |
Q |
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| T |
5501747 |
ttataattaccactctatagcattaatctcagcggtaattgctccatcttagacaactcatctcgatg |
5501680 |
T |
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