View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_19 (Length: 447)
Name: NF1288_low_19
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 418
Target Start/End: Complemental strand, 44623083 - 44622677
Alignment:
| Q |
30 |
tttttatgccacattttatcactaattatcaaggatagtaaaaactttcgaagcttatattatacttacttttgcaggctgtcgccacaggcaatctgta |
129 |
Q |
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| T |
44623083 |
tttttatgccacattttatcactaattatcaaggatagtaaaaactttctaagcttatattatacttacttttgcaggctgtcgccacaggcaatctgta |
44622984 |
T |
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| Q |
130 |
cctctcnnnnnnngtccttatgctctggagcttatgtggaggcttctgttaactctaatcctgtgaaaaattacatagcagctagtttttcttcactgcg |
229 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44622983 |
cctctcaaaaaaagtccttatgctctggagctcatgtggaggcttctgttaactctaatcctgtgaaaaattacatagcagctagtttttcttcactgcg |
44622884 |
T |
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| Q |
230 |
atctgaagcaaaacccctggtttccaaacaatcactcaaaaagcgcatgttttcagttggagctttagtagctcgaacagatcaggatgtttct------ |
323 |
Q |
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| T |
44622883 |
atctgaagcaaaacccctggtttccaaacaatcactcaaaaagcgcatgttttcagtgggagctttagtagctcgaacagatcaggatgtttctgatgca |
44622784 |
T |
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| Q |
324 |
------------gatgataagattggagtgttattgctaaaccttggaggtccagagactctagaagatgtgcaaccttttttatttaacctttttgcag |
411 |
Q |
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| T |
44622783 |
actcttacatctgatgataagattggagtgttattgctaaaccttggaggtccagagactctagaagatgtgcaaccttttttatttaacctttttgcag |
44622684 |
T |
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| Q |
412 |
acccggt |
418 |
Q |
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| T |
44622683 |
acccggt |
44622677 |
T |
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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 323 - 409
Target Start/End: Complemental strand, 39878051 - 39877965
Alignment:
| Q |
323 |
tgatgataagattggagtgttattgctaaaccttggaggtccagagactctagaagatgtgcaaccttttttatttaacctttttgc |
409 |
Q |
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| T |
39878051 |
tgatgacaagatcggagtgttattgttaaaccttggaggtccagagactctagatgatgtgcagccttttttatttaacctttttgc |
39877965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 414
Target Start/End: Complemental strand, 24036076 - 24036017
Alignment:
| Q |
355 |
ttggaggtccagagactctagaagatgtgcaaccttttttatttaacctttttgcagacc |
414 |
Q |
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||||||||||||||||||||||||||||| || |||| |||||| ||||||||| |||| |
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| T |
24036076 |
ttggaggtccagagactctagaagatgtgaaatattttctatttaccctttttgctgacc |
24036017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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