View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_2 (Length: 741)
Name: NF1288_low_2
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 68 - 711
Target Start/End: Complemental strand, 42393841 - 42393198
Alignment:
| Q |
68 |
gcggcatatggtttatttaactctgattcaaattaaaatttatttgagaatgctaacatgtgccctaaggcacgtgttgaagaacttaataccattgagt |
167 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
42393841 |
gcggtatatggtttgtttaactctgattcaaattaaaatttatttgagaatgctaacatgtgccctaaggcgtgcgttgaagaacttaataccattgagt |
42393742 |
T |
|
| Q |
168 |
ttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaaaccaggagtaatgagga |
267 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393741 |
ttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgaatttgcaatggcagaaatgatgaacaaaccaggagtaatgagga |
42393642 |
T |
|
| Q |
268 |
aggttcaagaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaac |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393641 |
aggttcaagaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaac |
42393542 |
T |
|
| Q |
368 |
ccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgttt |
467 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393541 |
ccttcgtttgcacccatcacttccacttctaatgtctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgttt |
42393442 |
T |
|
| Q |
468 |
gtgaacgtttgggctattcatagagacccttccatttgggagaaaccgttagaatttgatccgacaaggttcttggatggtaaatgggattataaaggga |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393441 |
gtgaacgtttgggctattcatagagacccttccatttgggagaaaccgctagaatttgatccgacaaggttcttggatggtaaatgggattataaaggga |
42393342 |
T |
|
| Q |
568 |
atgacttcaattatttcccctttggttctggaagaaggatatgtgctggaatagcaatggctgagaggaatgttttgtactttatagccacccttatgca |
667 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393341 |
atgacttcaattatttcccctttggttctggaagaaggatatgtgctggaatagcaatggctgagaggaatgttttgtactttatagccacccttatgca |
42393242 |
T |
|
| Q |
668 |
ctcgtttgattggacaatacctcaaggagaaaagttggatgtat |
711 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393241 |
ctcgtttgattggacaatacctcaaggagaaaagttggatgtat |
42393198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 175 - 700
Target Start/End: Complemental strand, 42377182 - 42376657
Alignment:
| Q |
175 |
aacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaaaccaggagtaatgaggaaggttca |
274 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
42377182 |
aacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatggcagaaatgatgaacaaaccagaagtgatgaggaaggttca |
42377083 |
T |
|
| Q |
275 |
agaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgt |
374 |
Q |
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|||||| || ||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||| |||||| |
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| T |
42377082 |
agaggagttagaaactgtggttggaaaagataacttagtagaagagtctcatattcacaagctaacctacttacatgcagtgatgaaagaaactcttcgt |
42376983 |
T |
|
| Q |
375 |
ttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacg |
474 |
Q |
| |
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|| ||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| ||| | |||| |
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| T |
42376982 |
ttacaccctgcacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtctttatcaacg |
42376883 |
T |
|
| Q |
475 |
tttgggctattcatagagacccttccatttgggagaaaccgttagaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgactt |
574 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42376882 |
tttgggctattcatagagacccttatgtttgggagaacccactagaatttgatcctacaaggttcttggatggtaaatgggattatagtgggaatgactt |
42376783 |
T |
|
| Q |
575 |
caattatttcccctttggttctggaagaaggatatgtgctggaatagcaatggctgagaggaatgttttgtactttatagccacccttatgcactcgttt |
674 |
Q |
| |
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||| |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| ||||||||||| |||||| |||| |
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| T |
42376782 |
caactatttcccttttggctctggaagaaggatttgtgccggaatagcaatggctgagaggacggttttgtactttgtagccacccttgtgcacttgttt |
42376683 |
T |
|
| Q |
675 |
gattggacaatacctcaaggagaaaa |
700 |
Q |
| |
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||||||||| | |||||||||||||| |
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| T |
42376682 |
gattggacagttcctcaaggagaaaa |
42376657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 166 - 478
Target Start/End: Complemental strand, 42387539 - 42387228
Alignment:
| Q |
166 |
gtttgtatgaacaggacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaatgatgaacaaaccaggagtaatgag |
265 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||||||||||||||||||| || ||||||||| ||| ||| |||||||| |||| |||| ||||||||| |
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| T |
42387539 |
gtttatatgaacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatagcataaatgatggacaa-ccagaagtaatgag |
42387441 |
T |
|
| Q |
266 |
gaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaa |
365 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42387440 |
gaaggttcaagaggaactggaaatcgtggttgggaaagataacttagtagaagagtctcatattcaaaagctaccctacttgcaagcagtaatgaaagaa |
42387341 |
T |
|
| Q |
366 |
acccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgt |
465 |
Q |
| |
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|||||||||||||||||| ||||||||||| || | ||||| ||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||| | |
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| T |
42387340 |
acccttcgtttgcacccaacacttccacttttagtccctcactgcccaagtgaaaccaccaacattggaggctacacaattccagagggatctcgtgtct |
42387241 |
T |
|
| Q |
466 |
ttgtgaacgtttg |
478 |
Q |
| |
|
|| | |||||||| |
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|
| T |
42387240 |
ttatcaacgtttg |
42387228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 533 - 712
Target Start/End: Complemental strand, 42387220 - 42387041
Alignment:
| Q |
533 |
aaggttcttggatggtaaatgggattataaagggaatgacttcaattatttcccctttggttctggaagaaggatatgtgctggaatagcaatggctgag |
632 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||||||||| ||||| |
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| T |
42387220 |
aaggttcttggatggtaaatgggattatagtgggaatgacttcaactatttcccttttggctctggaagaaggatttgtgccggaatagcaatgtctgag |
42387121 |
T |
|
| Q |
633 |
aggaatgttttgtactttatagccacccttatgcactcgtttgattggacaatacctcaaggagaaaagttggatgtatc |
712 |
Q |
| |
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|||| |||||||||||| ||||||||||| |||||| ||||||||||||| | |||||||||||||| |||||||||| |
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|
| T |
42387120 |
aggacggttttgtactttgtagccacccttgtgcacttgtttgattggacagttcctcaaggagaaaatatggatgtatc |
42387041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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