View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_21 (Length: 437)
Name: NF1288_low_21
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 95 - 423
Target Start/End: Original strand, 41281053 - 41281381
Alignment:
| Q |
95 |
cagcctttgattgttgaaaaccaatttcttgaattacacaagaaaaacgttggaaccaactgcgagatgcttgctttagcccataaagtgacttgtggag |
194 |
Q |
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| T |
41281053 |
cagcctttgattgttgaaaaccaatttcttgaattgcacaagaaaaacgttggaaccaactacgagatgcttgctttagcccataaagtgacttgtggag |
41281152 |
T |
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| Q |
195 |
tcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaaccaaatcgccgtgaagaaatgcattttgtacatcc |
294 |
Q |
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| T |
41281153 |
tcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaaccaaatcgccgtgaagaaatgcattttgtacatcc |
41281252 |
T |
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| Q |
295 |
atttggtgtaaaggccaatttcgaactgcagcaacagctaataagcatcgaacagtggtcaattttgcaaccggagcaaaagtatccttataatcaatgc |
394 |
Q |
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| T |
41281253 |
atttggtgtaaaggccaatttcgaattgcagcaacagctaataagcatcgaacagtggttaattttgcaaccggagcaaaagtatccttataatcaatgc |
41281352 |
T |
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| Q |
395 |
cttcacgttgggttaaccctttggcaaca |
423 |
Q |
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| T |
41281353 |
cttcacgttgggtgaaccctttggcaaca |
41281381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 293
Target Start/End: Complemental strand, 9675665 - 9675532
Alignment:
| Q |
160 |
gatgcttgctttagcccataaagtgacttgtggagtcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaa |
259 |
Q |
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| T |
9675665 |
gatgcttgtttgagtccataaagtgacttattgagccgacatacaacgttctccccctgtcggcgaagaccaggtggaggctccatgtacactaattcat |
9675566 |
T |
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| Q |
260 |
ccaaatcgccgtgaagaaatgcattttgtacatc |
293 |
Q |
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| T |
9675565 |
gcaaatcaccatgaagaaaggcattttgcacatc |
9675532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 779566 - 779518
Alignment:
| Q |
28 |
cactttccccatccttcttctccgtcccaaccccggacttctcatcgtt |
76 |
Q |
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| T |
779566 |
cactttccccatccttcttctccgtcccaaccccggacttctcatcgtt |
779518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 293
Target Start/End: Complemental strand, 25068560 - 25068427
Alignment:
| Q |
160 |
gatgcttgctttagcccataaagtgacttgtggagtcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaa |
259 |
Q |
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| T |
25068560 |
gatgcttgtttgagtccataaagtgacttattgagccgacatacaacgttctccccctgtcggcgaagaccaggtggaggctccatgtacactaattcat |
25068461 |
T |
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| Q |
260 |
ccaaatcgccgtgaagaaatgcattttgtacatc |
293 |
Q |
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| T |
25068460 |
gcaaatcaccatgaagaaaggcattttgcacatc |
25068427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 5289992 - 5289948
Alignment:
| Q |
268 |
ccgtgaagaaatgcattttgtacatccatttggtgtaaaggccaa |
312 |
Q |
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| T |
5289992 |
ccgtgaagaaatgcatttttgacatccatttgatgtaacggccaa |
5289948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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