View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_24 (Length: 400)
Name: NF1288_low_24
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 128 - 393
Target Start/End: Complemental strand, 25996149 - 25995885
Alignment:
| Q |
128 |
acaattggcattattatatgtacataaagataaatatgaatttaataaaatccactttattcatatttcatttacagttcatatgatttttctaaagtaa |
227 |
Q |
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| T |
25996149 |
acaattggcattattatatgtacataaagataaatatgaatttaataaaatccactttattcatattttatttacagttcatatgatttttctaaagtaa |
25996050 |
T |
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| Q |
228 |
attcctcaatccaaggagaggtaaatcttataaatatttagagaggcgcataaaaatttataaaattatattatattgttact-----atcactatattc |
322 |
Q |
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| T |
25996049 |
attcctcaatc-aaggagaggtaaatcttaaaaatatttagagaggcgcataaaaatttataaaattatatt-----gttactatcatatcactatattc |
25995956 |
T |
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| Q |
323 |
ttaaatgcattgattattgtcaaatgtggataaacttagcctgtaagaattcttaagagttagaataatct |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25995955 |
ttaaatgcattgattattgtcaaatgtggataaacttagcctgtaagaattcttaagagttagaagaatct |
25995885 |
T |
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Back To:
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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 779566 - 779518
Alignment:
| Q |
4 |
cactttccccatccttcttctccgtcccaaccccggacttctcatcgtt |
52 |
Q |
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| T |
779566 |
cactttccccatccttcttctccgtcccaaccccggacttctcatcgtt |
779518 |
T |
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