View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_25 (Length: 399)
Name: NF1288_low_25
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 95 - 391
Target Start/End: Original strand, 9833864 - 9834160
Alignment:
| Q |
95 |
gctcacttctccacactgctgttgatcttgttaacgagaccaagctggataatgagattaaatcatggctagcttttgctgcccaaaaagtcgttgaagt |
194 |
Q |
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| T |
9833864 |
gctcacttctccacactgctgttgatcttgttaacgagaccaagctggataatgagattaaatcatggctagcttttgctgcgcaaaaagtcgttgaagt |
9833963 |
T |
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| Q |
195 |
aaatgcattggccaaggcattggctggtcaaaaggatgaggtaatcaaccttcttttcctttatcatacatcaaacaaaacttgataacaaaattgcatc |
294 |
Q |
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| T |
9833964 |
aaatgcattggccaaggcattggctggtcaaaaggatgaggtaatcaaccttcttttcctttatcatacatcaaacaaaacttgataacaaaattgcatc |
9834063 |
T |
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| Q |
295 |
ttagttaatttttatctatcttccaacttatttaatttttgttttaattcattattcactcaatcaaatcattgtttcatttgcaggccttcatctc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9834064 |
ttagttaatttttatctatcttccaacttatttaatttttgttttaattcattattcactcaatcaaatcattgtttcatttgcaggccttcttctc |
9834160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 33468757 - 33468613
Alignment:
| Q |
95 |
gctcacttctccacactgctgttgatcttgttaacgagaccaagctggataatgagattaaatcatggctagcttttgctgcccaaaaagtcgttgaagt |
194 |
Q |
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|||||||||| ||||||||||| ||||| ||||||||||||||| ||||| |||| ||||| |||||| |||||||||||||||||||||| |||||||| |
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| T |
33468757 |
gctcacttcttcacactgctgtggatctcgttaacgagaccaagttggatgatgaaattaagtcatggttagcttttgctgcccaaaaagttgttgaagt |
33468658 |
T |
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| Q |
195 |
aaatgcattggccaaggcattggctggtcaaaaggatgaggtaat |
239 |
Q |
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| T |
33468657 |
aaatgcattggccaatgcacttgcaggcaacaaggatgaggtaat |
33468613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 35946784 - 35946921
Alignment:
| Q |
100 |
cttctccacactgctgttgatcttgttaacgagaccaagctggataatgagattaaatcatggctagcttttgctgcccaaaaagtcgttgaagtaaatg |
199 |
Q |
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||||| |||||||| |||||||| || || |||||||||||||| | || |||||||| ||||| |||||||| || |||||| | ||||||||||||| |
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| T |
35946784 |
cttcttcacactgcagttgatctggtgaatgagaccaagctggaccaagaaattaaatcttggcttgcttttgcagcacaaaaaatagttgaagtaaatg |
35946883 |
T |
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| Q |
200 |
cattggccaaggcattggctggtcaaaaggatgaggta |
237 |
Q |
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| T |
35946884 |
ccttgtccaaggcattgtctggacaaaaggatgaggta |
35946921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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