View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_26 (Length: 395)
Name: NF1288_low_26
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 102 - 368
Target Start/End: Original strand, 7710427 - 7710693
Alignment:
| Q |
102 |
gtcaattaaaaaagattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagcccttcacatacattaatcactcatcc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7710427 |
gtcaattaaaaaagattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagcccttcacatacattaatcactcatcc |
7710526 |
T |
|
| Q |
202 |
attagccatagcattgaactcaccatggcttctttttctacacttttctcctctctaactctcacaatagcctttctctcattttcttgctcatcacaac |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7710527 |
attagccatagcattgaactcaccatggcttctttttctacacttttctccactctaattctcacaatagcccttctctcattttcttgctcatcacaac |
7710626 |
T |
|
| Q |
302 |
atctcttctcaccagttgcaaaagacccaataaccaatctattctccacattactttgggttggaac |
368 |
Q |
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| T |
7710627 |
agttcttctcaccagttgaaaaagacccaataaccaatctattctccactttactttgggtaggaac |
7710693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 102 - 368
Target Start/End: Original strand, 7732738 - 7733003
Alignment:
| Q |
102 |
gtcaattaaaaaagattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagcccttcacatacattaatcactcatcc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||| ||||||||| ||||||| ||||||||| |
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| T |
7732738 |
gtcaattaaaaaagattaaataatgtatcagattatacattttctacacatattcatttctttaaaaaggaa-cccttcacagacattaaacactcatcc |
7732836 |
T |
|
| Q |
202 |
attagccatagcattgaactcaccatggcttctttttctacacttttctcctctctaactctcacaatagcctttctctcattttcttgctcatcacaac |
301 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7732837 |
attaccaatagcattgaactcaccatggcttctttttctacacttttctccactctaattctcacaatagcccttctctcattttcttgctcatcacaac |
7732936 |
T |
|
| Q |
302 |
atctcttctcaccagttgcaaaagacccaataaccaatctattctccacattactttgggttggaac |
368 |
Q |
| |
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| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7732937 |
agttcttctcaccagttgaaaaagacccaataaccaatctattctccacattactttgggtaggaac |
7733003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 102 - 362
Target Start/End: Original strand, 7725329 - 7725587
Alignment:
| Q |
102 |
gtcaattaaaaaagattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagcccttcacatacattaatcactcatcc |
201 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
7725329 |
gtcaattaaaaaagattaaatga-gtataagattatacattttcttcacatattcatttctataaaaaggaa-cccttcacatacattaatcactcatcc |
7725426 |
T |
|
| Q |
202 |
attagccatagcattgaactcaccatggcttctttttctacacttttctcctctctaactctcacaatagcctttctctcattttcttgctcatcacaac |
301 |
Q |
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|||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
7725427 |
attagcaatagcattgaactcacaatggcttcttttgctacacttttctcctctctaattctcacagtagcccttctctcattttcttgctcatcacaac |
7725526 |
T |
|
| Q |
302 |
atctcttctcaccagttgcaaaagacccaataaccaatctattctccacattactttgggt |
362 |
Q |
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| ||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
7725527 |
agttcttctcaccagttgaaaaagacccaataaccaatctatactccactttactttgggt |
7725587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 115 - 343
Target Start/End: Complemental strand, 7747154 - 7746927
Alignment:
| Q |
115 |
gattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagcccttcacatacattaatcactcatccattagccatagca |
214 |
Q |
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|
||||||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
7747154 |
gattaaataatgtatgagattatacattttcttcacatatttatttctataaaaaggaa-cccttcacatacattaatcactcatccattagcaatagca |
7747056 |
T |
|
| Q |
215 |
ttgaactcaccatggcttctttttctacacttttctcctctctaactctcacaatagcctttctctcattttcttgctcatcacaacatctcttctcacc |
314 |
Q |
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|||||||||| |||||||||||| ||||||||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||| |||||||||| |
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| T |
7747055 |
ttgaactcacaatggcttcttttgttacacttttctcctccctaactctcacaatagtccttctctcattttcatgctcatcacaacagttcttctcacc |
7746956 |
T |
|
| Q |
315 |
agttgcaaaagacccaataaccaatctat |
343 |
Q |
| |
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| ||| ||||||| || |||||||||||| |
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| T |
7746955 |
aattgaaaaagactcattaaccaatctat |
7746927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 7732651 - 7732708
Alignment:
| Q |
13 |
atactgtaagcaacaattgtttattccagatcataccaactacaaagcatattaaaga |
70 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7732651 |
atactgtaagcaacaattgtttattccagatcataccaactacaaagcatattaaaga |
7732708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 7725242 - 7725302
Alignment:
| Q |
13 |
atactgtaagcaacaattgtttattccagatcataccaactacaaagcatattaaagagga |
73 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |
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| T |
7725242 |
atactgtaagcaacaattgttcattccagatcataccaactacaaagcagattaaacagga |
7725302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 7718073 - 7718136
Alignment:
| Q |
10 |
attatactgtaagcaacaattgtttattccagatcataccaactacaaagcatattaaagagga |
73 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
7718073 |
attatactgtaagcaacaatttttaattccagatcataccaactacaaagaagattaaagagga |
7718136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 7710340 - 7710400
Alignment:
| Q |
13 |
atactgtaagcaacaattgtttattccagatcataccaactacaaagcatattaaagagga |
73 |
Q |
| |
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||||||||||||||| ||| | || |||||||||||||||||||||| | ||||||||||| |
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| T |
7710340 |
atactgtaagcaacagttgctcatgccagatcataccaactacaaagaagattaaagagga |
7710400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 7698570 - 7698608
Alignment:
| Q |
262 |
ctcacaatagcctttctctcattttcttgctcatcacaa |
300 |
Q |
| |
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|||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
7698570 |
ctcacaatagccattctctcattttcttgttcatcacaa |
7698608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 391
Target Start/End: Original strand, 779534 - 779566
Alignment:
| Q |
359 |
gggttggaacggagaagaaggatggggaaagtg |
391 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
779534 |
gggttgggacggagaagaaggatggggaaagtg |
779566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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