View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_27 (Length: 390)
Name: NF1288_low_27
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 49953887 - 49954168
Alignment:
| Q |
10 |
aagaatataccacggggatgacaaaatatgacagtgtttaattttgtttcctgtggaaacaagttttatgttgtttttatatatgtttcagtgtatattt |
109 |
Q |
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| T |
49953887 |
aagaatataccacggggatgacaaaatatgacagtgtttaattttgtttcctgtggaaacaagttttatgttgtttttatatatgtttcagtgtatattt |
49953986 |
T |
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| Q |
110 |
atactgtatgatttgatcactaaattaagaagaagnnnnnnntgtaaaataatttaccgggtagatcagtgtcttcaaggagttgtttaccatgatctct |
209 |
Q |
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| T |
49953987 |
atactgtatgatttgatcactaaattaagaagaagaaaaaaatgtaaaataaattaccgggtagatcagtgtcttcaaggagttgtttaccatgatctct |
49954086 |
T |
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| Q |
210 |
agagtattcatcaggcaaattgttaagatctaatgggtttccttgcggtctcctgaaaatggaacaaatacatatagtgaag |
291 |
Q |
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| T |
49954087 |
agagtattcatcaggcaaattgttaagatctaatgggtttccttgcggtctcctgaaaatggaacaaatacatatagtgaag |
49954168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 49954211 - 49954255
Alignment:
| Q |
325 |
ttaatgaatgagttaaagttatggagaagaagataaatatgaatg |
369 |
Q |
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| T |
49954211 |
ttaattaatgagttagagttatagagaagaagataaatatgaatg |
49954255 |
T |
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