View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_28 (Length: 390)
Name: NF1288_low_28
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 78 - 377
Target Start/End: Complemental strand, 42394149 - 42393850
Alignment:
| Q |
78 |
tcatagggaagccgaacttgtcggannnnnnncctgcgttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttga |
177 |
Q |
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| T |
42394149 |
tcatagggaagccgaacttgtcagatttttttcctgcgctggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttga |
42394050 |
T |
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| Q |
178 |
tggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaag |
277 |
Q |
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| T |
42394049 |
tggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaag |
42393950 |
T |
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| Q |
278 |
gaggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttgttacacatttatgtttagcgtcttctcac |
377 |
Q |
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| T |
42393949 |
gaggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttgttacacatttatgtttagcgtcttctcac |
42393850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 83 - 350
Target Start/End: Complemental strand, 42378229 - 42377959
Alignment:
| Q |
83 |
gggaagccgaacttgtcggannnnnnncctgcgttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaa |
182 |
Q |
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| T |
42378229 |
gggaagccgaatttgtcggatttttttcctgggttggcccggtttgatttgcagggtgttgtgaaagatatgaatgctttggtgcctcgctttgatggga |
42378130 |
T |
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| Q |
183 |
tatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggag---agtgaaagtaaggattttttgcagtttttgttgaatttgaagga |
279 |
Q |
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| T |
42378129 |
tatttgagaagatgattggtgaacgattgaagaaggaagaggatgggaaggagaataatgggagtagggactttctgcagtttttgttgaatttgaagga |
42378030 |
T |
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| Q |
280 |
ggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttgtt |
350 |
Q |
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| T |
42378029 |
ggagggtgattctaagacaccgtttacaaatactcatgttaaggctctactcatggtatgctacttttgtt |
42377959 |
T |
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