View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_29 (Length: 387)
Name: NF1288_low_29
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 12703389 - 12703039
Alignment:
| Q |
19 |
gcttagaaacttgttaactgcattgtttattactgtgttgtttaaaccttgtttacaaaatctaatgtgtactactttgtgaaacagaagctgctattca |
118 |
Q |
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| T |
12703389 |
gcttagaaacttgttaactgcattgtttattgctgtgttgtttaaaccttgtttacaaaatctaatgtgtactactttgtgaaacagaagatgctattaa |
12703290 |
T |
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| Q |
119 |
aactcgtcttccattgatgaaacatagcgaacctgagaaatccaaacaaggatttcaatttgggtcttgttcaacaagtgttggaattggagattcactc |
218 |
Q |
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| T |
12703289 |
aactcgtcttccattgacgaaacatagcgaacctgagaaatccaaacaaggatttcaatttgggtcttgttcaacaagtgttggaattggagattcactc |
12703190 |
T |
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| Q |
219 |
actcaagaaactagaagaattgatcgtccgctcacgaaagttgagacccccaat---cagcttcatagaaattctgcttccaaagtttgcaaaccattgc |
315 |
Q |
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| T |
12703189 |
actcaagaaactagaagaattgatcgtccgctcacgaaagttgagacccccaatcagcagcttcatagaaattctgcttccaaagtttgcaaaccattgc |
12703090 |
T |
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| Q |
316 |
agaatttggttcctgttgatgctttagcagcaaataaaacagttgatgatg |
366 |
Q |
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| T |
12703089 |
agaatttggttccagttgatgctctagaagcaaataaaacagttgatgatg |
12703039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 8207254 - 8207045
Alignment:
| Q |
39 |
cattgtttattactgtgttgtttaaaccttgtttacaaaatctaatgtgtactactttgtgaaacagaagctgctattcaaactcgtcttccattgatga |
138 |
Q |
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| T |
8207254 |
cattgttcattactgtgttgtttaacccttgttta--atatctaatatgtattcttatgtgaaacaggtcctgccattcgaattcggcttccattgagga |
8207157 |
T |
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| Q |
139 |
aacatagcgaacctgagaaatccaaacaaggatttcaatttgggtcttgttcaacaagtgttggaattggagattcactcactcaagaaactagaagaat |
238 |
Q |
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| T |
8207156 |
aacatcgtgaacctgaggaatccaaacaagtatgtcaattggggtcttgttcaagaagtgttagagtagcagattcgcttcctcgagatactagcagaat |
8207057 |
T |
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| Q |
239 |
tgatcgtccgct |
250 |
Q |
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| T |
8207056 |
tgatcgtccgct |
8207045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 8206942 - 8206849
Alignment:
| Q |
254 |
gaaagttgagacccccaatcagcttcatagaaattctgcttccaaagtttgcaaaccattgcagaatttggttcctgttgatgctttagcagca |
347 |
Q |
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| T |
8206942 |
gaaagctgagaccccaagtcagcaccatgggaaatctgctcccaaagtttgtaaaccattgccgaatgtggttcctgttgatgctgtagcagca |
8206849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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