View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_30 (Length: 361)
Name: NF1288_low_30
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 12703717 - 12703799
Alignment:
| Q |
249 |
gggcgtatccaaatcgaaacggagctttaaagaaccaaaacaacgatttcaaacagcggatatggaagaccaaagaagcaaac |
331 |
Q |
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| T |
12703717 |
gggcgtatccaaatcgaaacggagctttaaagaaccaaaacaacgatttcaaacagcggatatggaagaccaaagaagcaaac |
12703799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 12703480 - 12703618
Alignment:
| Q |
12 |
agagacaggttggtcaagttcctcagtaataccactcctttcaagttgttcattctcataatcttctctctttaccaacttccaat---tgtctttgaac |
108 |
Q |
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| T |
12703480 |
agagacaggttgttcaagttcctcagtaataccactcctttcaagttgttcattctcataatcttcacccattagcaacttcccattaatgtcttttaac |
12703579 |
T |
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| Q |
109 |
ttcatagcaccgccaaaacaagcatgagagatagttgaa |
147 |
Q |
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| T |
12703580 |
ttcatagcaccaccaaaacttgcatgagaggtagttgaa |
12703618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 8207358 - 8207427
Alignment:
| Q |
5 |
gaggagcagagacaggttggtcaagttcctcagtaataccactcctttcaagttgttcattctcataatc |
74 |
Q |
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| T |
8207358 |
gaggagaacagacaggttgttcaagttcctcggttataccactcctttcgagttgttcattctcataatc |
8207427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 8207663 - 8207738
Alignment:
| Q |
256 |
tccaaatcgaaacggagctttaaagaaccaaaacaacgatttcaaacagcggatatggaagaccaaagaagcaaac |
331 |
Q |
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| T |
8207663 |
tccaaatccaaacggatctttaaagcaccataacaacattttcaaatagcgcatacggaagaccaaagaagcaaac |
8207738 |
T |
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