View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_34 (Length: 319)
Name: NF1288_low_34
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 3286854 - 3286695
Alignment:
| Q |
64 |
gattttagttattttacatatttattcacataatttataaacttgttttagaataaaatcctcaaaaatcatgtaaataataccaacttggctactttcc |
163 |
Q |
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| T |
3286854 |
gattttagttattttacatatttattcacataatttataaacttgttttagaataaaatcctcaaaaatcatgtaaataataccaacttggctactttcc |
3286755 |
T |
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| Q |
164 |
attcctttttgtaggtctttttgaattgaatcgctgaggagatgaaaaagaactaagatt |
223 |
Q |
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| T |
3286754 |
attcctttttgtaggtctttttgaattgaatcgctgaggagatggaaaagaactaagatt |
3286695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 779468 - 779566
Alignment:
| Q |
216 |
ctaagattgctgcccaggagaaagcaaaggctgctgcggagnnnnnnnttaaacgatgagaagtccggggttgggacggagaagaaggatggggaaagtg |
315 |
Q |
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| T |
779468 |
ctaagattgcttcccaggagaaagcaaaggctgctgcggggataaaagtgaa-cgatgagaagtccggggttgggacggagaagaaggatggggaaagtg |
779566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 3286926 - 3286877
Alignment:
| Q |
13 |
atactgagaaggggagattgaagctaaacgtggggtgtttgataagtgcc |
62 |
Q |
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| T |
3286926 |
atactgagaaggggagactgaagctaaacgtggggtgtttgataagtgcc |
3286877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 772081 - 772045
Alignment:
| Q |
216 |
ctaagattgctgcccaggagaaagcaaaggctgctgc |
252 |
Q |
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| T |
772081 |
ctaagattgctgctaaggagaaagcaaaggctgctgc |
772045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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