View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1288_low_36 (Length: 318)
Name: NF1288_low_36
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_36 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 138 - 305
Target Start/End: Original strand, 7604412 - 7604579
Alignment:
| Q |
138 |
ataaactgattgttgcgtggtaaatcttcaaaagatcaattaactatattgcagtggtaattgagtgaaattaatatataaatcatttttacttaaagat |
237 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||| |||||||| ||||||||||||||| |||||||| || |
|
|
| T |
7604412 |
ataaactgattgttgcgcagtaaatcttcaaaaggtcaattaactatactgcagtcgtaattgtgtgaaatttatatataaatcatttgtacttaaaaat |
7604511 |
T |
|
| Q |
238 |
tcttagtctcattgtttaaaccgaatgaaaatgaaatttatgcacatattgttattattactacacct |
305 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| || || | ||| ||||||||||||||||| |
|
|
| T |
7604512 |
tcttagtctcattgttaaaaccgaaataaaatgaaattgatacataaattcttattattactacacct |
7604579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 268
Target Start/End: Complemental strand, 6411503 - 6411355
Alignment:
| Q |
126 |
ttatttcaattcataaactgattgttgcgtggtaaatcttcaaaagatcaatta----actatattgcagtggtaattgagtgaaattaatatataaatc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
6411503 |
ttatttcaattcataaactgattgttgcatggtaaatcttcaaaaggtcaattaactaactatactgcagtggtgattgtgtgaaattgatatataaatc |
6411404 |
T |
|
| Q |
222 |
atttttacttaaagattc--ttagtctcattgtttaaaccgaatgaaaa |
268 |
Q |
| |
|
|||| ||||| || |||| ||||| |||||||| ||||| |||||||| |
|
|
| T |
6411403 |
atttgtacttcaaaattcttttagtgtcattgttaaaaccaaatgaaaa |
6411355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 6791270 - 6791191
Alignment:
| Q |
130 |
ttcaattcataaactgattgttgcgtggtaaatcttcaaaagatcaattaactatattgcagtggtaattgagtgaaatt |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
6791270 |
ttcaattcataaacagattgttgcgtggtaaatcttcaaaagatcaattaactatactgcagtggtgattgtgtgaaatt |
6791191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 9718988 - 9718930
Alignment:
| Q |
66 |
atttgggtccacttgcaatcatgtaagattttgagtcacaaaattacaacttttcataaa |
125 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9718988 |
atttgggtccact-gcaatcatgaaagaatttgagtcacaaaattacaacttttcataaa |
9718930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 6849398 - 6849346
Alignment:
| Q |
220 |
tcatttttacttaaagattcttagtctcattgtttaaaccgaatgaaaatgaa |
272 |
Q |
| |
|
|||||| ||||| || ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
6849398 |
tcatttgtacttcaaaattcttagtctttttgttaaaaccgaatgaaaatgaa |
6849346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 6937771 - 6937831
Alignment:
| Q |
123 |
aaattatttcaattcataaactgattgttgcgtggtaaatcttcaaaagatcaattaacta |
183 |
Q |
| |
|
||||||||||| || ||||||||||| ||| | ||||||| |||||||| ||| ||||||| |
|
|
| T |
6937771 |
aaattatttcagttaataaactgattattgtgcggtaaatattcaaaaggtcagttaacta |
6937831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 12506 - 12454
Alignment:
| Q |
220 |
tcatttttacttaaagattcttagtctcattgtttaaaccgaatgaaaatgaa |
272 |
Q |
| |
|
|||||| ||||| || ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
12506 |
tcatttgtacttcaaaattcttagtctttttgttaaaaccgaatgaaaatgaa |
12454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University